us-fda-guidance-419fcd96abea06408287298767d80b61•Technical Specifications for Submitting Clinical Trial Data Sets for Treatment of Noncirrhotic Nonalcoholic Steatohepatitis (NASH): Guidance for Industry Technical Specifications Document
Technical Specifications for Submitting Clinical Trial Data Sets for Treatment of Noncirrhotic Nonalcoholic Steatohepatitis (NASH): Guidance for Industry Technical Specifications Document
us-fda-guidance-419fcd96abea06408287298767d80b61Technical Specifications for Submitting Clinical Trial Data Sets for Treatment of Noncirrhotic Nonalcoholic Steatohepatitis (NASH): Guidance for Industry Technical Specifications DocumentGuidance
Administrative guidance, not enacted legislation. This captured publisher edition preserves the listed document and attachments; later developments are not independently consolidated.
- Docket Number:
- FDA-2018-D-1216
- Issued by:
- Guidance Issuing OfficeCenter for Drug Evaluation and Research
This document provides detailed information and specifications for the content of the tabulated domains and analysis data sets submitted to FDA as part of the sponsor’s application for drugs intended to treat noncirrhotic nonalcoholic steatohepatitis (NASH). Revised nomenclature for NASH was introduced in 2023. The new nomenclature for NASH is metabolic dysfunction-associated steatohepatitis (MASH) with no change in histopathological criteria. FDA considers the term NASH interchangeable with MASH and has maintained the former nomenclature for NASH in this guidance pending universal acceptance of the new nomenclature.
This guidance does not provide recommendations for clinical development of drugs intended for the treatment of NASH, or assessment of potential drug-induced liver injury.
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Technical Specifications for Submitting Clinical Trial Data Sets for Treatment of Noncirrhotic Nonalcoholic Steatohepatitis (NASH) Guidance for Industry Technical Specifications Document For questions regarding this technical specification document, contact CDER at cder-edata@fda.hhs.gov. U.S. Department of Health and Human Services Food and Drug Administration Center for Drug Evaluation and Research (CDER) December 2024 Technical Specifications Document
Revision History Date Version Summary of Revisions August 2021 1.0 Initial Version January 2022 1.1 • Section 5.0 – Added language about CDISC Controlled Terminology. • Revisions made to Section 5.1.4 - Corrected test code values for Ascites and Encephalopathy Grade. December 2024 1.2 • Revisions made to Section 5.1.3 – Corrected Microscopic Findings Test Results for NASH CRN Fibrosis State and Ishak Fibrosis Score. • Updated Table 5 in Section 5.1.5 on MELD related scores to include MELD 3.0. and corrected assignment of Child-Pugh test names to the respective test codes. • Updated Table 9 in Section 5.1.11 to include Hepatitis D tests. • Addition of language in Section 5.1.10 to reflect custom LC domain structured identically to LB for data in conventional units. • Revisions made to Section 5.1.13 – Corrected TSPARMCD variable name. • Addition of language in Section 5.2.3.1 to reflect custom ADLC data set structured identically to ADLB for data in conventional units.
Contains Nonbinding Recommendations Table of Contents 1.0 INTRODUCTION............................................................................................................. 1 2.0 RELEVANT ACRONYMS .............................................................................................. 2 3.0 FDA DATA STANDARDS CATALOG ......................................................................... 4 4.0 OVERVIEW OF DATA SETS ........................................................................................ 4 4.1 SDTM Domains .............................................................................................................................. 4 4.2 ADaM Data Sets ............................................................................................................................. 5 5.0 OVERVIEW OF DATA SET SPECIFICATIONS ....................................................... 7 5.1 SDTM Domains .............................................................................................................................. 8 5.1.1 Biospecimen Events (BE) Domain............................................................................................ 8 5.1.2 Biospecimen Findings (BS) Domain ........................................................................................ 8 5.1.3 Microscopic Findings (MI) Domain ......................................................................................... 8 5.1.4 Supplemental Microscopic Findings (SUPPMI) Domain ...................................................... 11 5.1.5 Disease Response and Clinical Classifications (RS) Domain ................................................ 12 5.1.6 Imaging Results (ZI) Domain ................................................................................................. 14 5.1.7 Adjudication (ZA) Domain ..................................................................................................... 14 5.1.8 Concomitant Medications (CM) Domain ............................................................................... 17 5.1.9 Medical History (MH) Domain .............................................................................................. 18 5.1.10 Laboratory (LB) Domain...................................................................................................... 18 5.1.11 Microbiology Specimens (MB) Domain ............................................................................... 19 5.1.12 Substance Use (SU) Domain ................................................................................................ 20 5.1.13 Trial Summary (TS) Domain ................................................................................................ 21 5.1.14 RELREC Domain ................................................................................................................. 21 5.1.15 Other SDTM Considerations ................................................................................................ 21 5.1.15.1 Gastroesophageal varices .............................................................................................. 21 5.1.15.2 All-cause mortality........................................................................................................ 22 5.2 ADaM Data Sets ........................................................................................................................... 22 5.2.1 Subject-Level Analysis Data Set (ADSL) ................................................................................ 22 5.2.2 Occurrence Data Structure (OCCDS) Data Sets ................................................................... 26 5.2.2.1 Adverse Event Analysis Data Set (ADAE) .................................................................... 27 5.2.3 Basic Data Structure (BDS) Data Sets ................................................................................... 28 5.2.3.1 Laboratory Analysis Data Set (ADLB) .......................................................................... 28 5.2.3.2 Drug Induced Liver Injury Analysis Data Set (ADDILI) .............................................. 30 5.2.3.3 Microscopic Findings Analysis Data Set (ADMI) ......................................................... 34 5.2.3.4 Non-Invasive Serum Biomarkers of Liver Fibrosis and NASH Analysis Data Set (ADRS) ..................................................................................................................... 35 5.2.4 Time-to-Event Analysis Data Set (ADTTE) ........................................................................... 37 APPENDIX .................................................................................................................................. 39 Example ADLB and ADDILI Data Sets ............................................................................................. 39 Example MI and SUPPMI Domains ................................................................................................... 40
Contains Nonbinding Recommendations 1 Technical Specifications for Submitting Clinical Trial Data Sets for 1 Treatment of Nonalcoholic Steatohepatitis (NASH) 2 3 Guidance for Industry 4 Technical Specifications Document1 5 6 7 8 This guidance represents the current thinking of the Food and Drug Administration (FDA or Agency) on 9 this topic. It does not establish any rights for any person and is not binding on FDA or the public. You can 10 use an alternative approach if it satisfies the requirements of the applicable statutes and regulations. To 11 discuss an alternative approach, contact the FDA office responsible for this guidance as listed on the title 12 page. 13 14 15 16 1.0 INTRODUCTION 17 18 Nonalcoholic steatohepatitis (NASH) is a subcategory of nonalcoholic fatty liver disease 19 (NAFLD). NASH carries a significant disease burden as it can progress to cirrhosis and liver 20 failure and is associated with an increase incidence of liver cancer. 21 22 The Division of Hepatology and Nutrition (DHN) serves as the clinical review division in the 23 Office of New Drugs (OND) for the review of marketing applications for drug and biological 24 products2 for the treatment of liver fibrosis due to NASH. In December 2018, FDA issued a draft 25 guidance outlining recommendations for clinical development of drugs intended for treatment of 26 noncirrhotic NASH with liver fibrosis.3 The 2018 draft guidance acknowledges that subjects 27 with NASH fibrosis have unique clinical considerations (e.g., underlying hepatic dysfunction) 28 that may present challenges in demonstrating favorable benefit-risk profile. Furthermore, 29 evaluation of potential drug-induced liver injury (DILI) in this population is challenging because 30 the risk of DILI in subjects with underlying liver disease has not been fully characterized and it 31 can be difficult to differentiate between progression of liver disease and DILI. 32 1 This guidance has been prepared by the Division of Biomedical Informatics, Research, and Biomarker Development and the Division of Hepatology and Nutrition in the Center for Drug Evaluation and Research at the Food and Drug Administration. You may submit comments on this guidance at any time. Submit comments to Docket No. FDA-2018-D-1216 (available at https://www.regulations.gov/docket?D=FDA-2018-D-1216) (see the instructions for submitting comments in the docket). 2 For the purposes of this guidance, the term drug or drugs includes both human drug and therapeutic biological products unless otherwise specified. 3 See the draft guidance for industry Noncirrhotic Nonalcoholic Steatohepatitis With Liver Fibrosis: Developing Drugs for Treatment (December 2018). When final, this guidance will represent the FDA’s current thinking on this topic. For the most recent version of a guidance, check the FDA guidance web page at https://www.fda.gov/regulatory-information/search-fda-guidance-documents.
Contains Nonbinding Recommendations 2 33 This document provides detailed information and specifications for the content of the tabulated 34 domains and analysis data sets submitted to FDA as part of the sponsor’s application for drugs 35 intended to treat noncirrhotic NASH. This guidance does not provide recommendations for 36 clinical development of drugs intended for the treatment of NASH, or assessment of potential 37 DILI. 38 39 Revised nomenclature for NAFLD and NASH was introduced in 2023.4 The proposed 40 nomenclature for NAFLD is metabolic dysfunction-associated steatotic liver disease (MASLD). 41 MASLD is diagnosed if a patient has hepatic steatosis (>5% hepatocytes) with at least one 42 cardiometabolic risk factor. Screening for other potential causes of steatotic liver disease is still 43 indicated. The new nomenclature for NASH is metabolic dysfunction-associated steatohepatitis 44 (MASH) with no change in histopathological criteria. FDA considers the terms NAFLD and 45 NASH interchangeable with MASLD and MASH, respectively, and has maintained the former 46 nomenclature for NASH in this guidance pending universal acceptance of the new nomenclature. 47 48 The recommendations outlined in the guidance pertain to submission of the sponsor’s tabulated 49 and analysis data sets in order to improve reviewability. These specifications also provide an 50 opportunity for dialogue between the sponsor and DHN to discuss issues related to trial design or 51 conduct that may affect the content of these data sets. These specifications are intended to 52 support the draft guidance for industry Noncirrhotic Nonalcoholic Steatohepatitis With Liver 53 Fibrosis: Developing Drugs for Treatment (NASH Guidance) and reflect the data standards and 54 processes described in the FDA Study Data Technical Conformance Guide.5 55 56 In general, FDA’s guidance documents do not establish legally enforceable responsibilities. 57 Instead, guidances describe the Agency’s current thinking on a topic and should be viewed only 58 as recommendations, unless specific regulatory or statutory requirements are cited. The use of 59 the word should in Agency guidance means that something is suggested or recommended, but 60 not required. 61 62 2.0 RELEVANT ACRONYMS 63 64 Abbreviation Description ADaM Analysis Data Model ADRG Analysis Data Reviewers Guide 4 ME Rinella, JV Lazarus, V Ratziu, SM Francque, AJ Sanyal, F Kanwal, D Romero, MF Abdelmalek, QM Anstee, JP Arab, M Arrese, R Bataller, U Beuers, J Boursier, E Bugianesi, CD Byrne, GE Castro Narro, A Chowdhury, H Cortez-Pinto, DR Cryer, K Cusi, M El-Kassas, S Klein, W Eskridge, J Fan, S Gawrieh, CD Guy, SA Harrison, SU Kim, BG Koot, M Korenjak, KV Kowdley, F Lacaille, R Loomba, R Mitchell-Thain, TR Morgan, EE Powell, M Roden, M Romero-Gómez, M Silva, SP Singh, SC Sookoian, CW Spearman, D Tiniakos, L Valenti, MB Vos, VW Wong, S Xanthakos, Y Yilmaz, Z Younossi, A Hobbs, M Villota-Rivas, and PN Newsome, 2023, A Multisociety Delphi Consensus Statement on New Fatty Liver Disease Nomenclature, 78(6): 1966–1986. 5 Available at https://www.fda.gov/industry/fda-resources-data-standards/study-data-standards-resources.
Contains Nonbinding Recommendations 3 Abbreviation Description APRI Aspartate Aminotransferase-to-Platelet Ratio Index BDS Basic Data Structure CAC Cardiac Adjudication Committee CDISC Clinical Data Interchange Standards Consortium CK-18 Cytokeratin-18 CRN Clinical Research Network DHN Division of Hepatology and Nutrition DILI Drug-Induced Liver Injury ELF Enhanced Liver Fibrosis FDA Food and Drug Administration HAC Hepatic Adjudication Committee MACE Major Adverse Cardiac Events MASH Metabolic Dysfunction-Associated Steatohepatitis MASLD Metabolic Dysfunction-Associated Steatotic Liver Disease MedDRA Medical Dictionary for Regulatory Activities MELD Model for End-Stage Liver Disease NAFLD Nonalcoholic Fatty Liver Disease NAS NAFLD Activity Score NASH Nonalcoholic Steatohepatitis NCI EVS National Cancer Institute Enterprise Vocabulary Services OCCDS Occurrence Data Structure PRO-C3 N-terminal propeptide of type III collagen RELREC Related Records Domain SDRG Study Data Reviewers Guide SDTM Study Data Tabulation Model
Contains Nonbinding Recommendations 4 Abbreviation Description SMQ Standardized MedDRA Query TAUG Therapeutic Area User Guide 65 3.0 FDA DATA STANDARDS CATALOG 66 67 This technical specification has been drafted in accordance with the currently supported versions 68 of the Study Data Tabulation Model (SDTM) Implementation Guide and Analysis Data Model 69 (ADaM) Implementation Guide as noted in the FDA Data Standards Catalog.6 As new versions 70 of the respective implementation guides become available and supported by FDA, this technical 71 specification may change to align to the newly supported implementation guide(s). 72 73 Sponsors should review the FDA Data Standards Catalog to ensure data submissions follow 74 FDA-supported standards. 75 76 4.0 OVERVIEW OF DATA SETS 77 78 This technical specification contains guidance for 21 data sets (14 SDTM domains and 7 ADaM 79 data sets) relevant to noncirrhotic NASH development programs briefly described below. The 80 subsequent sections provide more detailed descriptions regarding the information to be collected 81 and stored in each domain and/or data set. Sponsors should submit all data sets in accordance 82 with the Study Data Technical Conformance Guide, including those not discussed in this 83 technical specification.7 84 85 4.1 SDTM Domains 86 87 This technical specification provides guidance for providing 14 SDTM domains. Sponsors 88 should still provide standard SDTM domains in addition to those listed below, including but not 89 limited to Demographics (DM), Adverse Events (AE), Disposition (DS), Death Details (DD), 90 Subject Visits (SV), Exposure (EX), Comments (CO), etc. 91 92 Biospecimen Events (BE) domain: This domain contains information related to 93 collecting, handling, and processing biological specimens. It is an events domain 94 structured as one record per subject, per biospecimen event, per biospecimen identifier 95 and links to the Biospecimen Findings (BS) domains. 96 97 Biospecimen Findings (BS) domain: This findings domain contains information related 98 to observations of specimen quality and characteristics of collected and derived 99 biospecimens. This information is collected to assess the adequacy of the biopsies that are 100 6 Available at https://www.fda.gov/industry/fda-resources-data-standards/study-data-standards-resources. 7 Available at https://www.fda.gov/regulatory-information/search-fda-guidance-documents/study-data-technical- conformance-guide-technical-specifications-document.
Contains Nonbinding Recommendations 5 used for analysis and is structured as one record per subject, per measurement, per 101 biospecimen identifier. 102 103 Microscopic Findings (MI) domain: This domain contains all information related to 104 histological characteristics of liver biopsies. This domain is structured as one record per 105 subject, per biopsy parameter, per evaluator, per collection. 106 107 Supplemental Microscopic Findings (SUPPMI) domain: This domain contains 108 supplemental information related to the biopsies, specifically the sponsors’ assessment of 109 slide adequacy. Justification should be provided in this domain for specimens deemed 110 inadequate. 111 112 Disease Response and Clinical Classifications (RS) domain: This domain contains 113 information related to disease response to therapy that includes clinical classification 114 based on published criteria and captures results of Model for End-Stage Liver Disease 115 (MELD) scoring8 and Child-Pugh Classification. This findings domain is structured as 116 one record per subject, per response or clinical classification assessment time point, per 117 medical evaluator. 118 119 Imaging Results (ZI) domain: This custom domain contains results of imaging 120 procedures done to assess liver steatosis, inflammation, and fibrosis. Sponsors may 121 choose the tests and data points to collect from imaging procedures, but this domain 122 provides guidance to ensure the data is submitted to FDA in a consistent manner. 123 124 Adjudication (ZA) domain: This custom domain contains results of assessments of 125 individual adjudicators as it pertains to potential DILI and other clinical events and 126 outcomes. This domain is structured similar to the MI domain, where the evaluator 127 information is stored in ZAEVAL and ZAEVALID to account for intra- and inter- 128 observer variability. 129 130 Additional information, instructions, and CDISC Controlled Terminology are included in 131 individual subsections pertaining to the Concomitant Medications (CM), Medical History (MH), 132 Laboratory (LB), Microbiology Specimens (MB), Substance Use (SU), and Trial Summary (TS) 133 domains. 134 135 4.2 ADaM Data Sets 136 137 ADaM data sets include variables that represent derived study days. It is assumed that the anchor 138 date for study day 1 is Date of First Exposure to Treatment (TRTSDT) and this date of first dose 139 is identical to Date of Randomization (RANDDT). If the Date of First Exposure to Treatment 140 and Date of Randomization differ, sponsors should provide an explanation for this discrepancy. 141 All ADaM data sets should be accompanied by informative metadata, as provided in a compliant 142 ADaM define.xml document and Analysis Data Reviewers Guide (ADRG) that describes the 143 8 Individual components of MELD scoring are captured elsewhere, but final calculation for MELD is placed in the RS domain.
Contains Nonbinding Recommendations 6 source and derivation of the variables. In addition, programs used to create ADaM data sets 144 should be submitted. 145 146 Subject-Level Analysis Data Set (ADSL): This data set contains one record per subject. 147 This data set provides information about the subjects’ demographics, treatment arm, trial 148 start and end dates, and summary baseline characteristics. Many of the baseline 149 characteristic variables in this data set are calculated or derived values from other data 150 sets (e.g., baseline alanine aminotransferase (ALT)) and an associated categorization of 151 that value. The notes in the ADSL table provided within this document should be 152 considered a guide and a baseline instruction set; sponsors should submit additional 153 variables and derivations as they see fit. Specific sections of the ADSL should be carried 154 into other ADaM data sets for analysis purposes (e.g., Basic Demographic Variables, 155 Treatment Arms, etc.), and are noted in the full description of the ADaM data sets. All 156 derivations should be noted in the define.xml file, and additional notes about the data set 157 included in the ADRG. 158 159 Adverse Event Analysis Data Set (ADAE): This data set contains one record per 160 subject, per adverse event, per collection. All AEs reported for a subject during their 161 participation in the trial should be recorded. It also includes additional relevant variables 162 to the review, such as sponsor derived Standardized Medical Dictionary for Regulatory 163 Activities Query (MedDRA SMQ) flags and/or custom MedDRA queries for DILI. 164 165 Laboratory Analysis Data Set (ADLB): This data set contains one record per subject, 166 per lab test, per collection. The laboratory tests of most interest are noted below in the 167 full description for SDTM.LB, but this specification contains additional analysis 168 variables to be submitted in ADLB. However, it is acceptable for additional laboratory 169 tests to be included. If the submitted data set is greater than 5 GB, the data set should be 170 split according to laboratory panels of hematology, chemistry, urinalysis, and other (if 171 necessary, for miscellaneous tests). This data set is designed to be equivalent to an ADaM 172 compliant Basic Data Structure (BDS) laboratory data set with additional review division 173 specific variables. An additional custom data set ADLC structured identically to ADLB 174 containing conventional units should be submitted. It is ideal if both conventional and SI 175 units come directly from the lab vendor and should include all results from unscheduled 176 tests or visits, and local laboratories. Reference ranges used for specific populations 177 should be identified in the SDRG and ADRG. 178 179 Drug-Induced Liver Injury Analysis Data Set (ADDILI): This custom data set 180 contains one record per subject, per parameter, per collection, where each subject should 181 have a minimum of one parameter to evaluate potential DILI. Subjects deemed to have 182 potential DILI should have two additional parameters: one to list the action taken and 183 another to list the outcome. This data set also contains variables derived from pertinent 184 data from the ADLB data set, such as post-baseline maximum values for each of the liver 185 enzymes. In addition, this data set contains flags to indicate any additional work-up 186 conducted to evaluate potential DILI. Sponsors may create new variables to support the 187 analysis or additional parameters using the existing variables (or both) in consultation 188 with FDA. 189
Contains Nonbinding Recommendations 7 190 Microscopic Findings Analysis Data Set (ADMI): This data set contains one record per 191 subject, per biopsy parameter, per evaluator, per collection. If re-read of biopsies is 192 performed, this data set should include flags to indicate different readings for the same 193 biopsy. This data set is meant to capture all source biopsy records and evaluate subjects 194 with respect to the histological endpoints as designated by the study protocol. Each 195 histological endpoint is given its own parameter and evaluated in AVALC (e.g., ‘Y’ or 196 ‘N’). Additional criteria and analysis flags should also be included as needed from the 197 sponsor. This data should be submitted when the histological data are collected and 198 reported to FDA. 199 200 Non-Invasive Serum Biomarkers of Liver Fibrosis and NASH Analysis Data Set 201 (ADRS): The ADRS data set contains the non-invasive NASH and fibrosis serum 202 biomarkers sponsors may wish to evaluate such as Cytokeratin-18 (CK-18), MELD 203 score, Enhanced Liver Fibrosis (ELF) score, Liver Fibrosis (FIB-4) score, Aspartate 204 Aminotransferase-to-Platelet Ratio Index (APRI), etc. Measurements may be derived as 205 calculations from data points in other data sets such as SDTM.LB or SDTM.RS. This 206 data set follows the same structure as the SDTM.RS domain but contains additional 207 parameters; each non-invasive endpoint (e.g., MELD Score from Baseline <12 to >=15 208 post-baseline) is given its own parameter and evaluated in AVALC (e.g., ‘Y’ or ‘N’). 209 Additional criteria and analysis flags should be included as the sponsor sees fit. This data 210 should be submitted when the non-invasive serum biomarkers are collected and reported 211 to FDA. 212 213 Analysis Time to Event Data Set (ADTTE): This data set is one record per subject, per 214 parameter, per time point. Sponsors should use this data set to evaluate time-to-event 215 endpoints for all subjects. This guidance contains sample parameters, but sponsors should 216 consult with FDA on the specific parameters relevant to their program. 217 218 5.0 OVERVIEW OF DATA SET SPECIFICATIONS 219 220 Each section below provides specifications and/or appropriate CDISC Controlled Terminology 221 that describes the desired content and structure of the data set. The variable names and associated 222 metadata are based on current CDISC SDTM and ADaM standards where possible. If any 223 variable is unclear, sponsors are encouraged to discuss the expectations with DHN. 224 225 Sponsors are strongly encouraged to seek DHN input for additional custom data sets and 226 variables to support determination of efficacy and/or safety. Though sponsors should consider 227 the data sets referenced in this guidance as FDA’s recommendation to support regulatory review, 228 some variables may not be appropriate for all clinical trials. 229 230 CDISC Controlled Terminology developed and maintained by CDISC and National Cancer 231 Institute Enterprise Vocabulary Services (NCI EVS)9 should be used where applicable, but 232 codelists may be extensible. If a submission used alternate controlled terminology or extended 233 any codelist, then sponsors should indicate this in the define.xml document as well as the SDRG 234 9 Available at https://evs.nci.nih.gov/ftp1/CDISC/SDTM/SDTM%20Terminology.pdf.
Contains Nonbinding Recommendations 8 and ADRG. The variable labels and the variable type noted in the specifications should be used. 235 As updates are made to CDISC Controlled Terminology, sponsors should use the current version 236 provided by CDISC and NCI EVS. 237 238 5.1 SDTM Domains 239 240 5.1.1 Biospecimen Events (BE) Domain 241 242 The BE domain should contain information regarding the collection of specimens that are used 243 for histological assessment within the Microscopic Findings (MI) domain, including the 244 anatomic location from which the specimen was collected. The collection event is linked to the 245 Biospecimen Findings (BS) domain that stores information regarding any measurements 246 performed on the specimens. For example, a tissue sample that is collected, extracted, frozen, 247 shipped, and thawed should have five records, each with a BEDECOD value of 248 ‘COLLECTING’, ‘EXTRACTING’, ‘FREEZING’, ‘SHIPPING’ and ‘THAWING’ respectively. 249 250 5.1.2 Biospecimen Findings (BS) Domain 251 252 Sponsors should provide a complete listing of all characteristics of biospecimens and derived 253 samples used for analysis in the Microscopic Findings (MI) domain. These measurements are 254 used to assess the adequacy and integrity of the samples collected. Sponsors should collect and 255 submit information for the following Biospecimen Characteristics Test Name (BSTEST) values: 256 257 Table 1: Biospecimen Domain Test Values 258 259 BSTESTCD BSTEST BSORRES Notes DIAMETER Diameter This test is extended from the BSTEST codelist. LENGTH Length The result should be reported in millimeters (mm). 260 It is important to note that sponsors may submit additional tests to support the decision to include 261 or exclude the sample from analysis. In addition, sponsors may use the Related Records 262 (RELREC) domain to connect the specimens between the BS and MI domains. 263 264 5.1.3 Microscopic Findings (MI) Domain 265 266 Currently, the surrogate endpoints that are acceptable to DHN for a phase 3 trial to support 267 approval for treatment of noncirrhotic NASH with fibrosis are biopsy-based under 21 CFR 314 268 Subpart H - Accelerated Approval of New Drugs for Serious or Life-Threatening Illnesses. A 269 semi-quantitative scoring system that considers a core set of histological features known as the 270 NASH Clinical Research Network (CRN) Scoring System is used to assess NASH. Sponsors 271 may provide data for additional scoring systems conforming to CDISC standards.10 Details on 272 alternative scoring should be described in the SDRG and ADRG. 273 10 Available at https://www.cdisc.org/standards.
Contains Nonbinding Recommendations 9 274 Subjects should have an overall histological diagnosis of NASH with liver fibrosis before the 275 NASH CRN Score applies. The NASH CRN Scoring System consists of an evaluation of fibrosis 276 using the NASH CRN Fibrosis Stage and the NAFLD Activity Score (NAS), where NAS 277 combines scores of steatosis, lobular inflammation, and hepatocellular ballooning.11 For drug 278 development programs intended for treatment of noncirrhotic NASH with liver fibrosis, FDA has 279 accepted as critical inclusion criteria in NASH trials a NAS greater than or equal to 4 with at 280 least 1 point each in inflammation and ballooning along with a NASH CRN fibrosis score greater 281 than stage 1 fibrosis but less than stage 4 fibrosis. 282 283 Liver biopsy data can be tabulated using CDISC’s MI Domain. The MI domain is designed to 284 hold information generated from histological, pathological, and immunohistological images 285 obtained via microscopic evaluations of tissue samples. The MI domain provides a record for 286 each microscopic finding observed, where multiple microscopic tests on a specimen may be 287 conducted. 288 289 As the biopsy tissue may be processed into multiple slides prior to histopathological evaluation, 290 each individual slide may be assessed for individual NASH components. Sponsors should 291 determine whether or not the individual slides are adequate for assessment and record those 292 results in the Supplemental MI (SUPPMI) domain. Sponsors should also link records within the 293 MI, BS, and BE domains via a RELREC domain. Based on the specifications of the MI domain 294 and the CDISC Controlled Terminology approved thus far for liver fibrosis scoring, each specific 295 component of the NAS should be recorded using the Microscopic Findings Test Detail 296 (MITSTDTL) variable. Likewise, the total NAS score is represented with MITSTDTL of ‘Total 297 Score’ with the criteria (NAS) being held in Microscopic Findings Test Code (MITESTCD) and 298 Microscopic Findings Test (MITEST) variables, to group the individual components and total 299 score of NAS. 300 301 Given that histological assessments of NAFLD and NASH are subject to inter- and intra- 302 observer variability,12 sponsors should capture the observer details in the MI domain using the 303 Evaluator (MIEVAL) and Evaluator ID (MIEVALID) variables. The measure evaluator is stored 304 in MIEVAL and within the MIEVALID variable when distinction between multiple evaluators 305 with the same role is necessary. Where MIEVALID is populated, MIEVAL should exist and 306 have a non-null value. CDISC Controlled Terminology should be used to populate the values for 307 these variables. In cases where multiple evaluators provide assessments for a given time point 308 measurement or for an overall assessment, an independent assessor identifies one of multiple 309 measurements to be the accepted one and should be indicated through use of the Accepted 310 Record Flag variable (MIACPTFL). Values for this variable are not meant to be derived by the 311 sponsor. 312 313 11 DE Kleiner, EM Brunt, M Van Natta, C Behling, MJ Contos, OW Cummings, LD Ferrell, YC Liu, MS Torbenson, A Unalp-Arida, M Yeh, AJ McCullough, and AJ Sanyal, 2005, Design and Validation of a Histological Scoring System for Nonalcoholic Fatty Liver Disease, Hepatology, 41(6):1313–1321. 12 DE Kleiner and HR Makhlouf, 2016, Histology of Nonalcoholic Fatty Liver Disease and Nonalcoholic Steatohepatitis in Adults and Children, Clin Liver Dis, 20(2):293–312.
Contains Nonbinding Recommendations 10 CDISC Controlled Terminology provides values of ‘Fibrosis’ within MITESTCD and MITEST. 314 While there is currently no specified terminology published by CDISC for the NASH CRN 315 Fibrosis Stage, CDISC does provide terminology for other liver fibrosis scoring criteria for use 316 with the Microscopic Findings Test Detail (MITSTDTL) variable. MITSTDTL is a qualifier 317 variable for MITESTCD and MITEST. Based on this, sponsors should specify NASH CRN 318 Fibrosis Stage in MITSTDTL, used in conjunction with MITESTCD and MITEST of ‘Fibrosis.’ 319 Results from the biopsy can be specified using the Microscopic Findings Original Result 320 (MIORRES) variable. 321 322 Tables 2 (recommended) and 3 (permissible) below contain a representation of concepts for the 323 MI domain. Sponsors should discuss with the review division if any of the permissible tests are 324 required for an individual trial. Sponsors should store any comments about the biopsy or slide 325 readings in a Comments (CO) domain. 326 327 Table 2. Recommended Microscopic Findings Test Codes, Tests, Test Details and Results13 328 329 MITESTCD MITEST MITSTDTL MIORRES NASHIND Histological Presence of NASH with Fibrosis Indicator Yes, No NAS NAFLD Activity Score STEATOSIS 0, 1, 2, 3 NAS NAFLD Activity Score LOBULAR INFLAMMATION 0, 1, 2, 3 NAS NAFLD Activity Score BALLOONING 0, 1, 2 NAS NAFLD Activity Score TOTAL SCORE 0, 1, 2, 3, 4, 5, 6, 7, 8 STEAT Steatosis STEATOSIS GRADE <5%, 5-33%, >33-66%, >66% STEAT Steatosis STEATOSIS LOCATION Zone 3, Zone 1, Azonal, Panacinar STEAT Steatosis MICROVESICULAR STEATOSIS Present, Absent FIBROSIS Fibrosis NASH CRN FIBROSIS STAGE 0, 1A, 1B, 1C, 2, 3, 4 INFLAM Inflammation LOBULAR INFLAMMATION No foci, <2 foci, 2-4 foci, >4 foci INFLAM Inflammation PORTAL INFLAMMATION14 None to minimal, >Minimal 13 Note: The terminology listed in the table below is proposed terminology. 14 Portal Inflammation is recommended for pediatric trials and permissible for adult trials.
Contains Nonbinding Recommendations 11 MITESTCD MITEST MITSTDTL MIORRES HCCINJ Hepatocellular Injury BALLOONING DEGENERATION None, Few, Many PTNUM Number of Portal Tracts 330 Table 3. Permissible Microscopic Findings Test Codes, Tests, Test Details and Results 331 332 MITESTCD MITEST MITSTDTL MIORRES FIBROSIS Fibrosis ISHAK FIBROSIS SCORE 0-6 INFLAM Inflammation MICROGRANULOMAS Present, Absent HCCINJ Hepatocellular Injury ACIDOPHIL BODIES None to rare, Many HCCINJ Hepatocellular Injury MALLORY BODIES None to rare, Many HCCINJ Hepatocellular Injury PIGMENTEED MACROPHAGES None to rare, Many HCCINJ Hepatocellular Injury MEGAMITOCHONDRIA None to rare, Many 333 5.1.4 Supplemental Microscopic Findings (SUPPMI) Domain 334 335 Sponsors should provide a Supplemental Microscopic Findings (SUPPMI) domain with a 336 parameter to assess the adequacy of biopsy sample(s) collected for analysis. Adequacy of the 337 slide(s) created for evaluating the histopathological features (e.g., steatosis, inflammation, 338 ballooning) should be established based on results collected in the BS and MI domains. Sponsors 339 should provide their rationale in the supplemental qualifier ‘Image Condition’ for slides 340 determined to be not adequate for analysis. If there are multiple reasons, ‘Image Condition’ 341 should take a value of ‘MULTIPLE’ with the individual reasons listed in QVAL for ‘Image 342 Condition 1’ and ‘Image Condition 2.’ Sponsors may provide additional slide-level data points in 343 the SUPPMI domain as they see fit (e.g., evaluator name, container name). The table below 344 provides the variables and terminology to be used for assessing adequacy of the sample. 345 346
Contains Nonbinding Recommendations 12 Table 4. Terminology for SUPPMI Domain 347 348 RDOMAIN IDVAR IDVARVAL QNAM QLABEL QVAL MI Use these variables to link back to MI domain MIOIQ Overall Image Quality Expected Values: Adequate, Not Adequate MI MIIMCND Image Condition e.g., Blurry Image, Cracked Slide, Multiple MI MIIMCND1 Image Condition 1 List Condition 1 if Multiple Conditions MI MIIMCND2 Image Condition 2 List Condition 2 if Multiple Conditions 349 5.1.5 Disease Response and Clinical Classifications (RS) Domain 350 CDISC provides specific guidance for characterizing and recording clinical indicators of hepatic 351 disease progression including MELD Scoring,15 West Haven Hepatic Encephalopathy Grade,16 352 and Child-Pugh Classification17 in the RS domain. 353 • MELD Related Scores (e.g., MELD, MELD Sodium (MELD-Na), MELD 3.0): While 354 there are no current CDISC guidance for MELD-related scores, sponsors should follow a 355 similar modeling strategy as MELD scoring as shown in Table 5. Individual laboratory 356 test result values (e.g., Creatinine, Bilirubin, INR) and patient sex should be represented 357 in the LB domain and composite scoring in the RS domain where the linkage is 358 represented using the --LNKID variable. The relationship between the two domains is 359 stored in the RELREC domain. 360 361 • West Haven Hepatic Encephalopathy Grade: The measure evaluator is stored in 362 Evaluator (RSEVAL), and if distinction between multiple evaluators with the same role 363 is necessary, this information is stored within the Evaluator ID (RSEVALID) variable. 364 Where RSEVALID is populated, RSEVAL should exist and have a non-null value. 365 Results should be populated in the Original (RSORRES) and Standard Character 366 (RSSTRESC) Results variables and take values of ‘GRADE 0’, ‘GRADE 1’, ‘GRADE 367 2’, ‘GRADE 3’, or ‘GRADE 4’. 368 369 15 Available at https://www.cdisc.org/standards/foundational/qrs/model-end-stage-liver-disease. 16 Available on the https://www.cdisc.org/ website after login at https://www.cdisc.org/system/files/members/standard/foundational/qrs/SDTM%20RS- WH%20Hepatic%20Encephalopathy%20Grade%20v1%20Public%20Domain.pdf. 17 Available on the https://www.cdisc.org/ website after login at https://www.cdisc.org/system/files/members/standard/foundational/qrs/SDTM%20RS-Child- Pugh%20v1%20Public%20Domain.pdf.
Contains Nonbinding Recommendations 13 • Child-Pugh Classification: Guidance provided by CDISC provides a way to represent 370 the individual laboratory test result values in the LB domain collection of ascites 371 information in the CE domain, and composite scoring in the RS domain where the 372 linkage is represented using the --LNKID variable from each of the domains. For 373 example, a serum bilirubin result of 2.3 mg/dL would result in a RSORRES of ‘2 to 3’ 374 and a RSSTRESN value of 2 where RSTEST = ‘CPS01-Serum Bilirubin.’ The 375 relationship between the two domains is represented in a RELREC domain. Since the 376 input to the Child-Pugh Encephalopathy Grade parameter originates from the West 377 Haven Hepatic Encephalopathy Grade that is also modeled in the RS domain (see above 378 section on ‘West Haven Hepatic Encephalopathy Grade’), the guidance further provides 379 linking of these two RS records through the use of the RSGRPID variable. 380 381 The table below provides CDISC Controlled Terminology that has been developed for RSCAT, 382 RSTESTCD and RSTEST. Refer to the current version of the NCI EVS to ensure no changes to 383 the terminology relevant to the RS domain. 384 385 Table 5. Terminology for Disease Response and Clinical Classifications (RS) Domain18 386 387 RSCAT RSTESTCD RSTEST CDISC Definition (if available) MELD MELD0101 MELD-01 Score Model for End Stage Liver Disease–MELD Score. MELD-NA MELD0201 MELD-NA Score MELD-3.0 MELD0301 MELD-03 Score WEST HAVEN HEPATIC ENCEPHALOPATHY GRADE WHEG0101 WHEG01-WH Hepatic Encephalopathy Grade West Haven Hepatic Encephalopathy Grade – Grade. CHILD-PUGH CLASSIFICATION CPS0101 CPS01- Encephalopathy Grade Child-Pugh Classification - Encephalopathy Grade. CPS0102 CPS01-Ascites Child-Pugh Classification - Ascites. CPS0103 CPS01-Serum Bilirubin Child-Pugh Classification - Serum bilirubin, mg/dL. CPS0104 CPS01-Serum Albumin Child-Pugh Classification - Serum albumin, g/dL. CPS0105A CPS01-PT, Sec Prolonged Child-Pugh Classification - Prothrombin time, sec prolonged. 18 Note: MELD-NA terminology is proposed terminology and not listed in the NCI EVS.
Contains Nonbinding Recommendations 14 RSCAT RSTESTCD RSTEST CDISC Definition (if available) CPS0105B CPS01-PT, INR Child-Pugh Classification - Prothrombin time, international normalized ratio (INR). CPS0106 CPS01-Total Score Child-Pugh Classification - Child-Pugh total score. CPS0107 CPS01-Grade Child-Pugh Classification - Child-Pugh grade. 388 5.1.6 Imaging Results (ZI) Domain19 389 390 The custom ZI domain captures results of liver imaging procedures (e.g., MRI or CT scan). 391 392 Sponsors may choose to conduct imaging procedures to further investigate the liver during the 393 clinical trial, including measurements for liver steatosis, inflammation, and/or fibrosis. Imaging- 394 based biomarkers are currently not accepted by DHN to support primary efficacy assessments in 395 trials intending to support a marketing application; however, they can be used to assess 396 preliminary efficacy in early phase trials and as exploratory or secondary endpoints to provide 397 supportive evidence. It is therefore important for these data points to be submitted consistently. 398 The procedure itself should be recorded in the Procedures (PR) domain and results of the 399 procedure should be recorded in this custom Imaging Results (ZI) domain. 400 401 The ZI domain takes the structure of a findings domain and should contain variables such as 402 Imaging Results Test (ZITEST), Imaging Results Test Code (ZITESTCD), and Imaging Results 403 Original Result (ZIORRES). Sponsors may use their discretion regarding which data points to 404 collect and submit from the imaging procedure(s). Recording of the procedure in the PR domain 405 and results of that procedure in the ZI domain may be linked via the RELREC domain. 406 407 5.1.7 Adjudication (ZA) Domain 408 409 Sponsor protocols may specify for certain events and/or clinical outcomes to be adjudicated by 410 investigator(s) and/or committee(s). Sponsors should create a custom ZA domain to provide 411 assessments by individual adjudicators as it relates to certain events (e.g., DILI). Examples of 412 adjudicated events in NASH development programs may include DILI, Liver-Related Death, 413 Hepatic Decompensation Events, Major Adverse Cardiac Events (MACE), and Cardiac-Related 414 Death. All potential events sent for adjudication should be included in the data set regardless of 415 the adjudication outcome. 416 417 The ZA domain should follow the structure of a Findings About Events or Interventions (FA) 418 domain. An FA domain utilizes the SDTM findings class structure with the addition of an 419 19 Note: Future releases of the SDTMIG may contain a Gastrointestinal System Findings (GI) domain as discussed in the Crohn’s Disease Therapeutic Area User Guide (TAUG). If and when the GI domain becomes available in a future version of the SDTMIG and if FDA supports that new version, sponsors may choose to submit ZI findings into the GI domain.
Contains Nonbinding Recommendations 15 ‘Object’ (--OBJ) variable that serves to specialize the topic being measured within the -- 420 TESTCD/--TEST variable. 421 422 Sponsors should specify in their protocol and in the ZA domain the event that is being 423 adjudicated, type of investigator assessing the event as well as the committee responsible for 424 resolving any discrepancies between individual adjudicators. For example, the custom ZA 425 domain may provide DILI assessments and/or Liver-Related Death/Clinical Outcomes by 426 individual hepatologists and a Hepatic Adjudication Committee (HAC), if applicable. MACE 427 and Cardiac-Related Death events may be adjudicated by a Cardiac Adjudication Committee 428 (CAC). 429 430 The date of the adjudicator’s assessment may be stored in ZADTC. The earliest date that the 431 assessor determines the subject to have met the criteria should be modeled as its own record with 432 ZATEST value of ‘EVALUATED EVENT ONSET DATE’ with the date value stored in 433 ZAORRES. The Object (ZAOBJ) variable should hold the name of the event being evaluated, 434 such as ‘DILI’ or ‘CARDIAC MACE.’ Each block of records resulting from assessment of a 435 single adjudication event should be grouped using a unique Repetition Number (ZAREPNUM) 436 variable. The Category (ZACAT) variable may be used to distinguish if the adjudication is a 437 ‘FIRST ADJUDICATION’ or a ‘READJUDICATION.’ 438 439 For assessing potential DILI, each adjudicator’s assessment should include a category of 440 likelihood that the investigational or study product caused DILI. We recommend the likelihood 441 categories used by the Drug-Induced Liver Injury Network’s numeric score of 1 to 6 (1 = 442 Definite, 2 = Highly Likely, 3 = Probable, 4 = Possible, 5 = Unlikely, or 6 = Indeterminate).20 If 443 a HAC was used, then consensus assignment of likelihood category should also be provided (and 444 noted in the ZAEVAL variable). If the adjudicator is reviewing lab data to determine whether the 445 subject meets potential DILI injury, the records from the LB domain and the record(s) in the ZA 446 domain may be linked using the RELREC domain. 447 448 For assessing whether a subject meets given criteria (e.g., cardiac-related death), sponsors should 449 include in their study protocol the specific criteria being used for the event being adjudicated. 450 The Test (ZATEST) variable may take a value such as ‘EVENT CRITERIA MET’ with the 451 event itself stored in the ZAOBJ variable. The result variable (ZAORRES) may take values of 452 ‘Yes’ or ‘No.’ Any comments made by an adjudicator or an adjudication committee the sponsor 453 wishes to submit should be stored in the Comments (CO) domain, linked to the ZA domain by 454 means of the variables RDOMAIN (related domain), IDVAR (Identifying Variable), and 455 IDVARVAL (Identifying Variable Value) within the CO domain. Linking a comment to an 456 individual record in the ZA domain, use RDOMAIN = ‘ZA’, IDVAL = ‘ZASEQ’ and the 457 appropriate value of ZASEQ in IDVARVAL. 458 459 For assessing hepatic decompensation events requiring adjudication, the ZAOBJ variable could 460 take a value of ‘HEPATIC DECOMPENSATION EVENT.’ The adjudicator’s assessment of the 461 specific event causing the subject to reach the endpoint is stored in ZAORRES where ZATEST = 462 ‘ADJUDICATION OUTCOME’ with the adjudicator’s assessment of when the subject reached 463 that endpoint stored in ZAORRES where ZATEST = ‘EVALUATED EVENT ONSET DATE.’ 464 20 Available at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637941/pdf/nihms-444700.pdf.
Contains Nonbinding Recommendations 16 465 Table 6 contains the variables and subsequent comments, and Table 7 contains example 466 terminology for adjudicated events and outcomes. 467 468 Table 6. ZA Variables 469 470 Variable Name Variable Label Type Comments Adjudication Test and Results ZATESTCD Adjudication Test Code Char See Table 7. ZATEST Adjudication Test Char See Table 7. Sponsors may include additional tests beyond what is listed in Table 7. Additional tests can apply to all objects or some objects (i.e., sponsors are permitted to submit an object- specific test). ZAOBJ Object of Interest Char See Table 7. The category of event that is being adjudicated, e.g., ‘DILI’, ‘CARDIAC MACE’. If the trial protocol calls for additional events or outcomes to be adjudicated, sponsors may extend the codelist beyond what is listed in Table 7. ZACAT Category Char Used to define if the adjudication is a first adjudication or re-adjudication. ZAORRES Original Result Char The adjudicator’s assessment of ZATEST. ZASTRESC Standard Character Result Char Standardized Result of the adjudicator’s assessment of ZATEST. Adjudicator Information ZAEVAL Evaluator Char Role of the person who provided the evaluation. Used only for results that are subjective (e.g., assigned by a person or a group). Should be null for records that contain collected or derived data. Examples: INVESTIGATOR, ADJUDICATION COMMITTEE, VENDOR. ZAEVALID Evaluator Identifier Char Used to distinguish multiple evaluators with the same role recorded in ZAEVAL. Examples: ‘Hepatologist 1’, ‘Hepatologist 2’. ZAEVAL should be populated when ZAEVALID is populated. Other Flags ZAACPTFL Accepted Record Flag Char The Acceptance Flag identifies those records that have been determined to be the accepted assessment by an independent assessor. This flag would be provided by an independent assessor and when multiple evaluators (e.g., ‘Hepatologist 1’, ‘Hepatologist 2’, and ‘Hepatic Adjudication Committee’) provide assessment or evaluations at the same time point or an overall evaluation. 471
Contains Nonbinding Recommendations 17 Table 7. Example Terminology for Adjudicated Events and Outcomes 472 473 ZAOBJ ZATESTC D ZATEST ZAORRES DILI ADJDILI DILI ADJUDICATION SCORE 1-6 ADJDATE EVALUATED EVENT ONSET DATE Adjudicator’s assessment of when the subject met event criteria CARDIAC MACE ADJCRIT EVENT CRITERIA MET Yes, No ADJDATE EVALUATED EVENT ONSET DATE Adjudicator’s assessment of when the subject met event criteria CARDIAC DEATH ADJCRIT EVENT CRITERIA MET Yes, No ADJDATE EVALUATED EVENT ONSET DATE Date of Death LIVER-RELATED DEATH ADJCRIT EVENT CRITERIA MET Yes, No ADJDATE EVALUATED EVENT ONSET DATE Date of Death CAUSE OF DEATH ADJOUT ADJUDICATION OUTCOME Adjudicator’s assessment of cause of death ADJDATE EVALUATED EVENT ONSET DATE Date of Death HEPATIC DECOMPENSATI ON EVENT ADJOUT ADJUDICATION OUTCOME HEPATIC ENCEPHALOPATHY, ASCITES, VARICEAL BLEED, SPONTANEOUS BACTERIAL PERITONITIS ADJDATE EVALUATED EVENT ONSET DATE Adjudicator’s assessment of when the subject met event criteria 474 5.1.8 Concomitant Medications (CM) Domain 475 476 Sponsors should provide a complete list of concomitant medications for all subjects in 477 accordance with supported CDISC standards. In addition to prescription medications, sponsors 478 should include any over-the-counter medications (e.g., weight-loss medication, dietary and 479 herbal medications). Of particular interest are lipid-lowering agents, statins, antihypertensive, 480 antidiabetic, thiazolidinediones, vitamin E, and anticoagulants and antiplatelets. Data relating to 481 concomitant medications should be captured and recorded during scheduled visits as reflected in 482 the trial protocol and when the subject is undergoing evaluation for potential DILI. 483 484
Contains Nonbinding Recommendations 18 5.1.9 Medical History (MH) Domain 485 486 Sponsors should provide complete medical history data for all subjects in accordance with 487 supported CDISC standards. Of particular interest are preexisting medical conditions that may 488 impact NASH disease progression and/or DILI assessment (e.g., diabetes, primary liver cancers, 489 alcohol/substance use disorder, gallstone disease, heart failure, etc.). Sponsors should refer to the 490 draft NASH Guidance regarding recommendations for trial enrollment depending on the phase of 491 drug development. Additionally, sponsors should include a record in the MH domain for any 492 condition that precludes a subject from participating in the study, in addition to their record in 493 the Inclusion/Exclusion (IE) domain. 494 495 496 5.1.10 Laboratory (LB) Domain 497 498 Sponsors should provide the complete tabulated data for all lab measurements recorded, 499 including central and local labs (denoted using LBNAM variable) as well as scheduled and 500 unscheduled visits. All lab data should be provided in accordance with supported CDISC 501 Standards and Controlled Terminology and the Study Data Technical Conformance Guide. 502 Sponsors should discuss specific laboratory parameters to be collected with DHN. 503 Recommended parameters are listed below: 504 505 • Hematology parameters (e.g., white blood cell, hemoglobin, platelets) 506 507 • Metabolic parameters (e.g., electrolytes, hemoglobin A1C, creatine kinase, lactate 508 dehydrogenase) 509 510 • Liver parameters including bilirubin fractions21 (e.g., direct and indirect or conjugated 511 and unconjugated) 512 513 • Renal parameters (e.g., creatinine, estimated glomerular filtration rate) 514 515 • Lipid parameters 516 517 • Coagulation parameters (e.g., prothrombin time/international normalized ratio) 518 519 • Autoimmune parameters (e.g., Antinuclear antibody (ANA), anti-smooth muscle 520 antibody (ASMA), Total IgG levels) 521 522 In addition to the above tests, sponsors may wish to include other serum biomarkers that may be 523 relevant to understanding NASH, fibrosis, and/or DILI (e.g., ELF,22 CK-18, APRI, FIB-4, N- 524 21 Sponsors should use appropriate terminology to clearly reflect the method used to assess bilirubin fractions (i.e., conjugated vs. direct). 22 If the ELF Score is calculated histologically, the result should be stored in the MI domain for MI.MIORRES under MI.MITSTDTL = ‘ENHANCED LIVER FIBROSIS SCORE’ and MI.MITESTCD = ‘FIBROSIS’.
Contains Nonbinding Recommendations 19 terminal propeptide of type III collagen (PRO-C3), Phosphatidylethanol (PEth)). Note that 525 individual components of calculated serum biomarkers should have their own record(s) in the LB 526 domain. Any biomarker that is derived from individual components should store the analytical 527 method used for calculation stored in the Analysis Method variable (LB.LBANMETH). 528 Terminology for the components of and results for the aforementioned example serum 529 biomarkers are provided below in Table 8Table 8. All lab parameters submitted to FDA should 530 follow supported CDISC Controlled Terminology. 531 532 An additional custom domain called LC structured identically to the LB domain should contain 533 conventional units in --STRESU for the results in conventional units in the --STRESC and -- 534 STRESN variables. It is ideal if both conventional and SI units come directly from the lab 535 vendor. Submit the results of all tests obtained on subjects, including the results from 536 unscheduled tests or visits, and results obtained from local laboratories. Identify all reference 537 ranges used for specific populations in the SDRG. 538 539 Table 8. Terminology for Example Liver Serum Biomarkers in LB Domain23 540 541 LBTESTCD LBTEST NCI Code CDISC Definition (if available) ELF Components TIMP1 Tissue Inhibitor of Metalloproteinase 1 C82036 A measurement of the tissue inhibitor of metalloproteinase 1 in a biological specimen. P1NP Procollagen 1 N-Terminal Propeptide C96625 A measurement of the procollagen 1 N-terminal propeptide in a biological specimen. HYALUAC Hyaluronic Acid C112319 A measurement of hyaluronic acid in a biological specimen. Example Liver Serum Biomarkers ELF Enhanced Liver Fibrosis APRI AST to Platelet Ratio Index C156512 A calculation that indicates the likely presence of liver cirrhosis and fibrosis, measured as the relative measurement of aspartate aminotransferase (AST) to AST upper limit of normal, divided by the platelet count, and multiplied by 100. CYFRA18 Cytokeratin 18 Fragment C130160 A measurement of the cytokeratin 18 fragment in a biological specimen. LVFBRSC Liver Fibrosis Score C147385 A scoring system that evaluates liver pathology through the assessment of multiple blood test parameters, taking into account additional demographic factors such as the age and/or sex of the subject. P3NP Procollagen 3 N-Terminal Propeptide C128973 A measurement of the procollagen 3 N-terminal propeptide in a biological specimen. 542 5.1.11 Microbiology Specimens (MB) Domain 543 544 Sponsors should use the MB domain to provide serologic test results for hepatitis (hepatitis A, B, 545 C, and E) serology tests collected as part of the trial entry evaluation and during potential DILI 546 23 The line item for Enhanced Liver Fibrosis is proposed terminology in the LB domain as a calculation from the individual components (TIMP1, P1NP, HYALUAC).
Contains Nonbinding Recommendations 20 assessments, if applicable. CDISC Controlled Terminology for the hepatitis tests are provided in 547 Table 9 below. Please use the terms from SDTM Controlled Terminology (CT) Q3 2023 (2023- 548 09-29) even if the terms may not be listed in subsequent SDTM CT versions. 549 550 Table 9. Terminology for Hepatitis Serology in Microbiology Specimens Domain 551 552 MBTESTCD MBTEST NCI Code CDISC Definition (if available) HAAB* Hepatitis A Virus Antibody C92534 A measurement of the hepatitis A virus antibody in a biological specimen. HAIGMAB* Hepatitis A Virus IgM Antibody C92271 A measurement of hepatitis A virus IgM antibody in a biological specimen. HBSAG Hepatitis B Virus Surface Antigen C64850 A measurement of the surface antigen reaction of a biological specimen to the hepatitis B virus. HBCAB* Hepatitis B Virus Core IgM Antibody C96660 A measurement of the hepatitis B virus core antibody in a biological specimen. HCAB* Hepatitis C Virus Antibody C92535 A measurement of the hepatitis C virus antibody in a biological specimen. HCRNA Hepatitis C Virus RNA C142330 A measurement of the hepatitis C virus RNA in a biological specimen. HDRNA Hepatitis D Virus RNA C186156 A measurement of the hepatitis D virus RNA in a biological specimen HDAB* Hepatitis D Virus Antibody; Hepatitis Delta Antibody C96664 A measurement of the hepatitis D virus antibody in a biological specimen. HDIGGAB* Hepatitis D Virus IgG Antibody C119281 A measurement of the hepatitis D virus IgG antibody in a biological specimen. HDIGMAB* Hepatitis D Virus IgM Antibody C119282 A measurement of the hepatitis D virus IgM antibody in a biological specimen. HEIGGAB* Hepatitis E Virus IgG Antibody C106526 A measurement of IgG antibody to the hepatitis E virus in a biological specimen. HEIGMAB* Hepatitis E Virus IgM Antibody C96665 A measurement of IgM antibody to the hepatitis E virus in a biological specimen. HERNA Hepatitis E Virus RNA C142331 A measurement of the hepatitis E virus RNA in a biological specimen. * These terms exist in the SDTM Controlled Terminology (CT) Q3 2023 (2023-09-29) but may not be listed 553 subsequent versions. 554 555 5.1.12 Substance Use (SU) Domain 556 557 Data related to substance use (e.g., alcohol use) should be collected as part of the NASH clinical 558 trial and DILI evaluation. The extent of prior alcohol use should be assessed at baseline, during 559 protocol-defined scheduled visits, and in suspected cases of DILI. Data collected should be 560 recorded in the SU domain and included in the Inclusion/Exclusion (IE) domain as appropriate. 561 For example, a subject who consumes one 12-ounce beer per day may contain the following data 562 point: 563 564 • SUTRT: BEER 565 • SUCAT: ALCOHOL 566 • SUDOSE: 12 567
Contains Nonbinding Recommendations 21 • SUDOSU: OUNCES 568 • SUDOSFRQ: QD 569 570 Other substances such as tobacco or caffeine usage should also be recorded in the SU domain. 571 572 5.1.13 Trial Summary (TS) Domain 573 574 Data related to the trial summary should be collected and stored in the TS domain. Of particular 575 interest to FDA is the frequency that this technical specification is used in creating and 576 submitting trial data. Per the FDA Study Data Technical Conformance Guide, sponsors may 577 include an additional parameter in their TS domain to note that this technical specification was 578 used for the study. The parameter and associated value sponsors should use is noted below: 579 580 • TSPARMCD = FDATCHSP 581 • TSPARAM = FDA Tech Spec 582 • TSVAL = NASH Technical Specification Guidance version x.x 583 584 5.1.14 RELREC Domain 585 586 As discussed in previous sections, sponsors should use a RELREC domain to describe the 587 relationship between records captured in separate domains together. A common use case for the 588 RELREC domain is connecting AE and CM records. As it relates to this technical specification, 589 the RELREC domain may connect the needle size captured in the BS domain with the biopsy 590 slide measurements evaluated in the MI domain. Another example may be connecting the record 591 of an MRI procedure in the PR domain with the results of that MRI in the ZI domain. Where 592 relationships between records in different domains should be established, the RELREC domain 593 should store those relationships. 594 595 The full instructions for creating the RELREC domain, including the required variables, are 596 located in the SDTM Implementation Guide. 597 598 5.1.15 Other SDTM Considerations 599 600 5.1.15.1 Gastroesophageal varices 601 602 Subjects who progress to cirrhosis during the trial may undergo screening for gastroesophageal 603 varices on esophagogastroduodenoscopy (EGD). Information on the EGD can be modeled in 604 SDTM using the PR domain. The PR domain falls within the Interventions Class of domains and 605 is intended to capture information on interventional activity that are to have diagnostic, 606 preventive, therapeutic, or palliative effects. The name of the procedure, EGD, can be captured 607 within the Reported Name of Procedure (PRTRT) variable. 608 609 Currently, CDISC does not have any guidance on modeling the results of the EGD procedure 610 related to varices (e.g., number of varices, size of varices, presence of red wale marks). Given 611 that CDISC has a draft domain for Gastrointestinal System Findings (GI) that may be under 612 development, the current recommendation is to model the results of the EGD procedure in the 613
Contains Nonbinding Recommendations 22 custom Imaging Results (ZI) domain that follows the structure of a CDISC findings domain. 614 Occurrence of varices, size of varices, red wale marks, and variceal bleeding can be modeled 615 under using ZITESTCD and ZITEST Test Codes and Test Names. Sponsors may submit 616 additional data points about the results of the endoscopy in the ZI domain. 617 618 When gastroesophageal variceal hemorrhage is captured as an AE, it should be captured in the 619 AE domain, with verbatim term indicating gastroesophageal variceal hemorrhage captured in the 620 topic variable of AE.AETERM. The record in the AE domain should be linked to that of the ZI 621 domain using the --LNKID variable, with relationships captured using the RELREC domain. 622 623 5.1.15.2 All-cause mortality 624 625 All-cause mortality or death is a component of several composite endpoints currently accepted 626 by DHN to demonstrate clinical benefit in NASH clinical trials. If a subject dies during the 627 study, information regarding the subject’s death is tabulated in several SDTM domains, 628 including the Death Details (DD) domain, which should store all death information. Additional 629 domains that should include death information are the Disposition (DS) domain that records the 630 death as a disposition event, Adverse Events (AE), Demographics (DM) to populate the Death 631 Date (DTHDTC), and Death Flag (DTHFL) variables that are referenced within this domain. The 632 records within the AE, DS, and DD domains should be linked using the --LNKID variable, with 633 the relationship represented in the RELREC domain. Sponsors should consult CDISC Controlled 634 Terminology as well as the SDTM Implementation Guide in using these domains. 635 636 5.2 ADaM Data Sets 637 638 This section contains three parts: Analysis Data Set Subject Level (ADSL), Occurrence Data 639 Structure (OCCDS) data sets, and Basic Data Structure (BDS) data sets. At a minimum, sponsors 640 should provide the data sets and variables listed throughout these sections. Sponsors can and 641 should submit additional data sets and variables beyond what is listed below in accordance with 642 FDA-supported ADaM Implementation Guide (ADaMIG)24 in the FDA Data Standards Catalog. 643 644 Sponsors should also include appropriate Sequence Number variables in their ADaM data sets 645 for easy traceability back to the SDTM domains. Specific instructions are located in the ADaM 646 Implementation Guide. 647 648 5.2.1 Subject-Level Analysis Data Set (ADSL) 649 650 The ADSL data set contains one record per subject and derives information from other data sets 651 for analysis purposes. Sponsors should include all required variables in the ADSL, including 652 basic demographic information, assigned treatment, actual treatment received, treatment start and 653 end dates, whether the subject discontinued treatment or study early, treatment duration, and 654 study start and end dates. 655 656 Table 10 provides a list of variables that should be included in the ADSL data set. The baseline 657 variables should be used when those tests are collected and provided in the data submission. For 658 24 Available at https://www.cdisc.org.
Contains Nonbinding Recommendations 23 example, if ELF score is not collected and reported, the ELFBL variable is not required for this 659 data set. Sponsors may add additional flags to this data set as appropriate (e.g., special subject 660 populations of interest for subgroup analyses or relevant concomitant medications). 661 662 The comments column of Table 10 contains recommended derivations for the baseline variables. 663 Sponsors should include their derivations in the ADaM define.xml file. 664 665 Table 10. ADSL Variables 666 667 Variable Name Variable Label Type Comments Baseline Vital Signs Characteristics Variables WEIGHTBL Weight at Baseline (kg) Num VS.VSSTRESN where VSTEST = ‘WEIGHT’ and VSBLFL = ‘Y’ HEIGHTBL Height at Baseline (cm) Num VS.VSSTRESN where VSTEST = ‘HEIGHT’ and VSBLFL = ‘Y’ BMIBL Body Mass Index at Baseline (kg/m2) Num VS.VSSTRESN where VSTEST = ‘BMI’ and VSBLFL = ‘Y’ SYSBL Systolic Blood Pressure at Baseline (mmHg) Num VS.VSSTRESN where VSTEST = ‘Systolic Blood Pressure’ and VSBLFL = ‘Y’ DIABL Diastolic Blood Pressure at Baseline (mmHg) Num VS.VSSTRESN where VSTEST = ‘Diastolic Blood Pressure’ and VSBLFL = ‘Y’ HRBL Heart Rate at Baseline (beats/min) Num VS.VSSTRESN where VSTEST = ‘Heart Rate’ and VSBLFL = ‘Y’ RESPBL Respiratory Rate at Baseline (breaths/min) Num VS.VSSTRESN where VSTEST = ‘Respiratory Rate’ and VSBLFL = ‘Y’ WHBL Waist to Hip Ratio at Baseline Num VS.VSSTRESN where VSTEST = ‘Waist to Hip Ratio’ and VSBLFL = ‘Y’ Baseline Lab Characteristics ALTBL Baseline ALT Num ADLB.AVAL where ADLB.PARAMCD = ‘ALT’ and ADLB.DILIBLFL = ‘Y’ ALTCAT Baseline ALT Category Text Divide ADSL.ALTBL by LB.LBSTNRHI for the last pre- treatment record for ALT and set the category to one of the following: • If result is <=1: <= ULN • If result is >1 to <=3: > ULN to <=3x ULN • If result is >3 to <=5: >3x ULN to <=5x ULN • If result is >5: >5x ULN ALTCATN Baseline ALT Category (N) Integer Numeric Representation of ALTCAT. ‘1’ = ‘<=ULN’, ‘2’ = ‘>ULN to <=3x ULN’, ‘3’ = ‘>3x ULN to <=5x ULN’, ‘4’ = ‘>5x ULN’
Contains Nonbinding Recommendations 24 Variable Name Variable Label Type Comments ASTBL Baseline AST Num ADLB.AVAL where ADLB.PARAMCD = ‘AST’ and ADLB.DILIBLFL = ‘Y’ ASTCAT Baseline AST Category Text Divide ADSL.ASTBL by LB.LBSTNRHI for the last pre- treatment record for AST and set the category to one of the following: • If result is <=1: <= ULN • If result is >1 to <=3: >ULN to <=3x ULN • If result is >3 to <=5: >3x ULN to <=5x ULN • If result is >5: >5x ULN ASTCATN Baseline AST Category (N) Integer Numeric Representation of ASTCAT. ‘1’ = ‘<=ULN’, ‘2’ = ‘>ULN to <=3x ULN’, ‘3’ = ‘>3x ULN to <=5x ULN’, ‘4’ = ‘>5x ULN’ ALPBL Baseline ALP Num ADLB.AVAL where ADLB.PARAMCD = ‘ALP’ and ADLB.DILIBLFL = ‘Y’ ALPCAT Baseline ALP Category Text Divide ADSL.ALPBL by LB.LBSTNRHI for the last pre- treatment record for ALP and set the category to one of the following: • If result is <=1: <= ULN • If result is >1 to <=2: > ULN to <=2x ULN • If result is >2: >2x ULN ALPCATN Baseline ALP Category (N) Integer Numeric Representation of ALPCAT. ‘1’ = ‘<=ULN’, ‘2’ = ‘>ULN to <=2x ULN’, ‘3’ = ‘>2x ULN’ TBILIBL Baseline Total Bilirubin Num ADLB.AVAL where ADLB.PARAMCD = ‘BILI’ and ADLB.DILIBLFL = ‘Y’ TBILCAT Baseline Tot. Bilirubin Category Text Set to ‘<=ULN’ if ADSL.TBILIBL <= LBSTNRHI (for the last pre-treatment record in SDTM.LB where LBTESTCD = ‘BILI’); else set to ‘>ULN’ if ADSL.TBILIBL > LBSTNRHI TBILCATN Baseline Tot. Bilirubin Category (N) Integer Numeric representation of ADSL.TBILCAT. ‘1’ = ‘<=ULN’, ‘2’ = ‘>ULN’ CBILIBL Baseline Conjugated Bilirubin Num ADLB.AVAL where ADLB.PARAMCD = ‘BILIDIR’ and ADLB.DILIBLFL = ‘Y’ CBILCAT Baseline Conj. Bilirubin Category Text Set to ‘<=ULN’ if ADSL.CBILIBL <= LBSTNRHI (for the last pre-treatment record in SDTM.LB where LBTESTCD = ‘BILDIR’); else set to ‘>ULN’ if ADSL.CBILIBL > LBSTNRHI CBILCATN Baseline Conj. Bilirubin Category (N) Integer Numeric representation of ADSL.CBILCAT. ‘1’ = ‘<=ULN’, ‘2’ = ‘>ULN’ CPKCAT Baseline CPK Category Text Set to ‘Normal’ if LB.LBSTRESN <= LB.LBSTNRHI for LB.LBTESTCD = ‘CPK’ and LB.LBBLFL = ‘Y’; Set to ‘HIGH’ if LB.LBSTRESN > LB.LBSTNRHI for LB.LBTESTCD = ‘CPK’ and LB.LBBLFL = ‘Y’
Contains Nonbinding Recommendations 25 Variable Name Variable Label Type Comments LDHCAT Baseline LDH Category Text Set to ‘Normal’ if LB.LBSTRESN <= LB.LBSTNRHI for LB.LBTESTCD = ‘LDH’ and LB.LBBLFL = ‘Y’; Set to ‘HIGH’ if LB.LBSTRESN > LB.LBSTNRHI for LB.LBTESTCD = ‘LDH’ and LB.LBBLFL = ‘Y’ PLATCAT Baseline Platelets Category Text Set to ‘Normal’ if LB.LBSTRESN >= LB.LBSTNRLO for LB.LBTESTCD = ‘PLAT’ and LB.LBBLFL = ‘Y’; Set to ‘LOW’ if LB.LBSTRESN < LB.LBSTNRLO for LB.LBTESTCD = ‘PLAT’ and LB.LBBLFL = ‘Y’ EGFRBL Baseline eGFR Num Baseline eGFR value EGFRCAT Baseline eGFR Category Text Set to ‘Normal’ if Baseline eGFR >= 90, ‘Mild Renal Impairment’ if 60 =< Baseline eGFR < 90, ‘Moderate Renal Impairment’ if 30 =< Baseline eGFR < 60 and ‘Severe Renal Impairment’ if 30 > Baseline eGFR EGFRCATN Baseline eGFR Category (N) Integer Numeric representation of ADSL.EGFRCAT. ‘1’ if ‘Normal’, ‘2’ if ‘Mild Renal Impairment’, ‘3’ if ‘Moderate Renal Impairment’, ‘4’ if ‘Severe Renal Impairment’ Baseline Medical History Characteristics CHRONFL Chronic Liver Disease Flag Char Expected Values: ‘Y’ or ‘N’ Subjects with evidence of other causes of chronic liver disease at baseline should be flagged as ‘Y’. Else, ‘N’ DIABFL Diabetes Flag Char Expected values: ‘Y’ or ‘N’ ‘Y’ if the subject is diabetic at baseline. Else, ‘N’. GALLFL Gallstones Flag Char Expected values: ‘Y’ or ‘N’ ‘Y’ if the subject has a history of gallstones at baseline. Else, ‘N’. PCOSFL Polycystic ovary syndrome Flag Char Expected values: ‘Y’ or ‘N’ ‘Y’ if the subject has a history of Polycystic ovary syndrome at baseline. Else, ‘N’. Baseline Biopsy Characteristics FIBSCBL Baseline Fibrosis Score Char MI.MIORRES where MIBLFL = ‘Y’, MITESTCD = ‘FIBROSIS’ and MITSTDTL = ‘NASH CRN FIBROSIS STAGE’ ISHAKBL Baseline Modified ISHAK Score Num MI.MORRES where MIBLFL = ‘Y’, MITESTCD = ‘FIBROSIS’ and MITSTDTL = ‘ISHAK FIBROSIS SCORE’ STEOBL Baseline Steatosis Score Integer MI.MIORRES where MIBLFL = ‘Y’, MITESTCD = ‘NAS’ and MITSTDTL = ‘Steatosis’ HBALLBL Baseline Hep. Ballooning Score Integer MI.MIORRES where MIBLFL = ‘Y’, MITESTCD = ‘NAS’ and MITSTDTL = ‘Ballooning’ LOBINBL Baseline Lobular Inflammation Score Integer MI.MIORRES where MIBLFL = ‘Y’, MITESTCD = ‘NAS’ and MITSTDTL = ‘Lobular Inflammation’ PORTFL Baseline Portal Inflammation Text MI.MIORRES where MIBLFL = ‘Y’, MITESTCD = ‘INFLAM’ and MITSTDTL = ‘Portal Inflammation’ NASBL Baseline NAS Integer Sum of ADSL.STEOBL, ADSL.HBALLBL, ADSL.LOBINFL
Contains Nonbinding Recommendations 26 Variable Name Variable Label Type Comments NASCAT Baseline NAS Category Text Example NAS category: Set to ‘NAS <6’ if ADSL.NASBL<6; Set to ‘NAS >=6’ if ADSL.NASBL>=6 NASCATN Baseline NAS Category (N) Integer Numeric representation of NASCAT. ‘1’ = ‘NAS <6’, ‘2’ = ‘NAS >=6’ NASFIBFL Overall Histological Diagnosis of NASH with Fibrosis Flag Char Expected Values: ‘Y’ or ‘N’ If MI.MIORRES = ‘Yes’ where MI.MITESTCD = ‘NASHIND’, then ‘Y’. Else, ‘N’ Non-Invasive Baseline Characteristics MELDBL Baseline MELD Score Num RS.RSSTRESN when RS.RSBLFL = ‘Y’ and RSTEST = ‘MELD01-Score’ FIB4BL Baseline FIB4 Float Calculated using lab baseline values and age from Demographics as: Age (years) x AST (U/L)/[Platelet Count (x10^9/L) x ALT^(1/2) (U/L)] ELFBL Baseline ELF Float MI.MIORRES where MIBLFL = ‘Y’, MITESTCD = ‘Fibrosis’ and MITSTDTL = ‘Enhanced Liver Fibrosis Score’ APRIBL Baseline APRI Float LB.LBSTRESN where LB.LBBLFL = ‘Y’ and LBTESTCD = ‘APRI’ Concomitant Medications Characteristics LIPCAT Lipid-Lowering Agents Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Any lipid-lowering agents, including statins STATCAT Statins Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Statins only ANHYPCAT Antihypertensive Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Antihypertensive medications ANDIACAT Antidiabetic Medications Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Any antidiabetic medications, including Thiazolidinediones TZDCAT Thiazolidinediones Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Thiazolidinediones only VITECAT Vitamin E Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Vitamin E ANCPCAT Anticoagulants and Antiplatelets Category Char Expected values: ‘No Concomitant Use’, ‘Prior and Concomitant Use’, ‘New Concomitant Use’ Anticoagulants and Antiplatelets 668 5.2.2 Occurrence Data Structure (OCCDS) Data Sets 669 670 Occurrence Data Structure data sets (OCCDSv1.0) are used for the counting of subjects with a 671 given record or term and often include a coding dictionary (e.g., MedDRA for adverse events, 672 WHODrug for concomitant medications). In creating ADaM OCCDS data sets, sponsors should 673
Contains Nonbinding Recommendations 27 follow the guidance as specified by the ADaM Structure for Occurrence Data in the FDA Study 674 Data Technical Conformance Guide, including sections on dictionary coding and categorization 675 variables, timing variables, and flag and indicator variables. 676 677 5.2.2.1 Adverse Event Analysis Data Set (ADAE) 678 679 Sponsors should include all records from SDTM.AE. If a sponsor uses the approach of recording 680 multiple records in AE each time the event changes in severity, relationship, etc. then this should 681 be noted in the SDRG and ADRG. Also note that the specification includes a flag variable that 682 indicates which record had the worst severity grade for a given adverse event (MedDRA 683 preferred term) when there are multiple occurrences (records) of the same adverse event for the 684 same subject. Sponsors may select a grading scale of their choice, which should be prespecified 685 in the study protocol, SDRG, and ADRG. In addition, sponsors should consult the FDA Data 686 Standards Catalog for guidance on the appropriate MedDRA version to use. 687 688 To aid evaluation of potential DILI, this specification also includes a Hepatic Injury Flag to flag 689 AEs occurring within defined grouped queries (e.g., Custom MedDRA Queries) and 690 accompanying flags to identify the earliest record within each hepatic injury flag. Sponsors 691 should discuss the exact derivations of the hepatic injury flags with FDA. Any deviations from 692 the specifications below should be clearly communicated to the review division. 693 694 Table 11. ADAE Variables 695 696 Variable Name Variable Label Type Comments TRTEMFL Treatment- Emergent Analysis Flag Char Expected Values: ‘Y’ or null A value of ‘Y’ on a record should indicate a new or worsening AE after the first dose of study treatment. Metadata should be clear on the reference dates that are used to define the period during which an adverse event is considered treatment emergent. AOCCPIFL 1st Max Sev./Int. Occur Within PT Flag Char Expected Values: ‘Y’ or null Character indicator for the first occurrence of the maximum severity/intensity within the subject and preferred term. HPxxFL Hepatic Injury xx Flag Char Expected values: ‘Y’ or null Sponsors should create Hepatic Injury Flag(s) to capture specific preferred terms within the MedDRA hierarchy. Sponsors should consult FDA regarding how many flags are required and how exactly to derive each flag. HPFxxFL First Hepatic Injury xx Flag Char Expected values: ‘Y’ or null Create one additional flag for each HPxxFL flag created and flag the earliest (min ASTDY) on treatment (ASTDY >= 1) for each subject and record that fits the criteria. Otherwise, null DILIFL Potential DILI Event Flag Char Expected values: ‘Y’ or null Flag the following Adverse Events as ‘Y’: Fatigue, Nausea, Vomiting, Abdominal pain or tenderness, Fever, Rash, Pruritus, Jaundice/icterus, Altered mental status DILIPFL Potential DILI Event Flag (30- days prior) Char Expected values: ‘Y’, ‘N’ or null Null for records where DILIFL is null. For records with DILIFL = ‘Y’: if the event occurs in the 30 days before a lab-
Contains Nonbinding Recommendations 28 Variable Name Variable Label Type Comments identified DILI threshold met in the ADDILI data set, then ‘Y’. Else, ‘N’ DILIAFL Potential DILI Event Flag (30- days after) Char Expected values: ‘Y’,’N’ or null Null for records where DILIFL is null. For records identified with DILIFL = ‘Y’: if the event occurs in the 30 days after a lab-identified DILI threshold met in the ADDILI data set, then ‘Y’. Else, ‘N’ 697 698 5.2.3 Basic Data Structure (BDS) Data Sets 699 700 The following guidance should be used to create data sets that fall within the BDS structure (e.g., 701 ADLB to display laboratory data). Specific guidelines are included for several BDS data sets. All 702 BDS data sets should use the guidelines provided below, which have been written in accordance 703 with the ADaM Implementation Guide. 704 705 All BDS data sets should contain the identifier variables, record-level treatment and dose 706 variables, and timing variables as specified in the ADaM Implementation Guide, specifically the 707 section as it relates to the ADaM Basic Data Structure. 708 709 5.2.3.1 Laboratory Analysis Data Set (ADLB) 710 711 The following issues are considerations for the creation and content of the laboratory analysis 712 data set. Sponsors should follow the ADaM BDS model when creating this data set. Visit 713 windowing and/or inclusion of unscheduled visits should be included in this analysis data set 714 (liver-related lab results should be included for all scheduled and unscheduled visits). When 715 records are imputed or derived in any manner, the standard ADaM variable, DTYPE should be 716 used. All tests and records included in the SDTM.LB domain should be carried into the ADLB 717 data set, and sponsors should also include a derived parameter for the calculated R value. 718 Sponsors should provide a clear derivation method for their calculation of the R value. 719 720 It is acceptable for a sponsor’s ADLB data set to contain additional parameters beyond those 721 noted above. Similarly, variables in addition to those described below may be included. 722 723 As with the LB domain, submit two separate data sets for lab results. The ADLB data set should 724 contain SI units. An additional custom data set called ADLC structured identically to ADLB 725 should contain conventional units. It is ideal if both conventional and SI units come directly from 726 the lab vendor. Submit the results of all tests obtained on subjects, including the results from 727 unscheduled tests or visits, and results obtained from local laboratories. Identify all reference 728 ranges used for specific populations in the ADRG. For more information on CDER/CBER 729 current thinking on conventional units, please see the FDA Study Data Technical Conformance 730 Guide available on the FDA Study Data Standards Resources web page. 731 732 The ADLB specifications listed below include four important variables for the analysis of drug- 733 induced liver injury: DILIBLFL, PEAKFL, REDUCEFL, and ONSETFL. These flags look for 734 DILI records at their baseline, peak (maximum post-baseline), washout (e.g., 50% reduction after 735
Contains Nonbinding Recommendations 29 reaching maximum post-baseline), and onset (first sign of potential DILI). There are many 736 different ways to define the onset of liver injury; sponsors should refer to the existing guidance 737 for industry Drug-Induced Liver Injury: Premarketing Clinical Evaluation (July 2009)25 and 738 seek agreement with the FDA review division on how to specify the onset of DILI injury for 739 their study. 740 741 Table 12. ADLB Variables 742 743 Variable Name Variable Label Type Comments DILIFL Drug-Induced Liver Injury Flag Char Expected Value: ‘Y’ or null This flag should have ‘Y’ for the following records: • ALT, AST, ALP, GGT, Total Bilirubin, Direct Bilirubin, INR records AND • The evaluable record for each test at each visit. If more than one record is collected at each visit, a derived record should be created with DTYPE = ‘AVERAGE’. The average record should be flagged, and the individual records used to create the average record should not be flagged. Unscheduled visits may also be flagged as ‘Y’. Else, null ABLFL Analysis Baseline Flag Char Expected Value: ‘Y’ or null Character indicator to identify the baseline record for each subject and parameter. Sponsors should confirm with the FDA review division on an appropriate definition for baseline. Examples may include flagging the last record prior to treatment or deriving a new baseline record as the average of all pre-treatment records for a given subject and parameter. DILIBLFL DILI Baseline Flag Char Expected Value: ‘Y’ or null For each subject and liver biochemistry parameter, flag the baseline record used for DILI analysis as ‘Y’. This flag is similar to ABLFL, however, in subjects with elevated transaminase levels at enrollment who show improvements in their transaminase levels and in essence, establish a new lower baseline during the trial, sponsors should use the new lower transaminase values in subsequent assessment for potential DILI (and subsequently using this flag to identify the record used in baseline calculations for DILI analyses). Sponsors should seek review division agreement and provide clear guidance in their ADRG or define.xml file on derivations for alternate baseline calculations and provide a flag in the ADSL to indicate if any subjects have discrepancies between ABLFL and DILIBLFL for any liver biochemistry parameter. DTYPE Derivation Type Char For the case where there are multiple observations and an average or a geometric mean will be used for the observation for the visit window in the analysis instead of a single selected real observation. If this is the case, a new record should be created, and the records identified by having some values for these records 25 We update guidances periodically. For the most recent version of a guidance, check the FDA guidance web page at https://www.fda.gov/regulatory-information/search-fda-guidance-documents.
Contains Nonbinding Recommendations 30 Variable Name Variable Label Type Comments in DTYPE variable. The possible value could be ‘AVERAGE’, or ‘GEOMETRIC’, or other meaningful values. This should be explained in the define file or SAP. R2ANRHI Ratio to Analysis Range Upper Limit Num Ratio to the upper limit of the analysis range. Equal to AVAL / ANRHI. R2BASE Ratio to Baseline Value Num Ratio to the baseline value. Equal to AVAL / BASE. If used for a given PARAM, should be populated for all post-baseline records of that PARAM regardless of whether that record is used for analysis. ANL01FL Analysis Record Flag 01 Char Expected Values: ‘Y’ or null Flag the records to be used in analysis. If multiple records are recorded for a parameter at the same visit, use this flag to indicate which record should be used. Derived records (if it was appropriate to take an average of two records) may be flagged as ‘Y’. Sponsors should provide a clear derivation for how they choose to derive this flag. ANL02FL Analysis Record Flag 02 Char Expected Values: ‘Y’ or null Flag the maximum post-baseline record for each subject and parameter as ‘Y’ ANL03FL Analysis Record Flag 03 Char Expected Values: ‘Y’ or null Flag the minimum post-baseline record for each subject and parameter as ‘Y’ PEAKFL DILI Peak Flag Char Expected Values: ‘Y’, ‘N’ or null Null for all pre-treatment records and records where DILIFL = ‘N’. If ANL02FL = ‘Y’ and DILIFL = ‘Y’, then ‘Y’. Otherwise, ‘N’ REDUCEFL DILI Reduction Flag Char Expected Values: ‘Y’, ‘N’ or null Null for all pre-treatment records and records where DILIFL = ‘N’. Flag the first record after PEAKFL for each subject and parameter in which AVAL is equal to or less than 50% of the value of AVAL where PEAKFL = ‘Y’ ONSETFL DILI Lab Onset Flag Char Expected Values: ‘Y’ or null Sponsors should discuss an appropriate definition of DILI onset with DHN. The agreed upon definition should be prespecified in the study protocol. Based on the agreed upon definition, flag all DILI records as ‘Y’ at a given visit when the onset trigger has been met. For example, if ONSET is determined as the first time a subject’s ALT or AST value reaches >= 3x ULN with concurrent TB >= 2x ULN within 30 days of the ALT or AST elevation, when a subject does reach that threshold, all DILI records (ALT, AST, ALP, TB, DB, GGT) from that visit should be flagged as ‘Y’. LASTFL Last Record Per Parameter Flag Char Expected Values: ‘Y’ or null Flag the last record (max ADY) for each subject and parameter. NOTE: this is not limited to last on-treatment record; this may include follow-up records. 744 5.2.3.2 Drug Induced Liver Injury Analysis Data Set (ADDILI) 745 746 This custom data set will be used to analyze subjects for potential DILI. Sponsors should seek 747 agreement with the FDA review division on the appropriate parameters to use for DILI 748
Contains Nonbinding Recommendations 31 assessments. This data set contains variables that seek a maximum value within ‘xx’ days. 749 Sponsors should discuss with FDA the appropriate time window (e.g., 30 days) to use. 750 751 For any subject meeting the sponsor-established criteria for potential DILI, two additional 752 parameters should be created – one to provide the outcome and another to provide the action 753 taken as a result of potential DILI. 754 755 Sponsors may include additional parameters as they see fit and should consult with FDA 756 regarding the acceptability of the additional parameters. Additionally, this data set includes a set 757 of flag variables that identifies any procedure(s) and/or workups performed to evaluate a subject 758 for potential DILI. These flag variables may be derived from the SDTM.PR (Procedures), 759 SDTM.LB, or SDTM.MB domains (or other domains as determined by the sponsor). 760 761 The ADDILI data set should include the basic demographic information, treatment variables, 762 start and end date variables, and baseline lab characteristics variables from the ADSL data set. 763 764 Table 13. ADDILI Variables 765 766 Variable Name Variable Label Type Comments PARAM Parameter Char Expected values: ‘Potential DILI’ and ‘Outcome of Potential DILI’, ‘Action Taken from Potential DILI’ PARAMCD Parameter Code Char • For PARAM = Potential DILI: ‘DILI’ • For PARAM = Outcome of Potential DILI – Outcome: ‘OUTDILI’ • For PARAM = Action Taken from Potential DILI= ‘ACNDILI’ AVAL Analysis Value Num Expected Values: 1 or 0 Note: The criteria below are example criteria for evaluation of DILI. Sponsors may consult FDA for appropriate criteria for their study. Example 1: PARAMCD = ‘DILI’: • If ALTULNMX >= 3 and TBALTMX >= 2 and ALPALTMX < 2, then 1 OR • If ASTULNMX >= 3 and TBASTMX >= 2 and ALPASTMX < 2, then 1 • Else 0 Example 2: PARAMCD = ‘DILI’: • If ALPULNMX >= 2 and TBALPMX >= 2, then 1 • Else 0 AVALC Analysis Value (C) Char If AVAL = 1, then ‘Y’; if AVAL = 0, then ‘N’ For PARAMCD = ‘OUTDILI’ • Expected values: ‘FATAL’, ‘NOT RECOVERED/NOT RESOLVED’.
Contains Nonbinding Recommendations 32 Variable Name Variable Label Type Comments ‘RECOVERED/RESOLVED’, ‘RECOVERED/RESOLVED WITH SEQUELAE’, ‘RECOVERING/RESOLVING’, ‘UNKNOWN’ For PARAMCD = ‘ACNDILI’: • Expected values: ‘DOSE INCREASED’, ‘DOSE NOT CHANGED’, ‘DOSE RATE REDUCED’, ‘DOSE REDUCED’, ‘DRUG INTERRUPTED’, ‘DRUG WITHDRAWN’, ‘NOT APPLICABLE’, ‘UNKNOWN’ ALTULNMX Post-Baseline Maximum Ratio ALT/ULN Num For each subject, ADLB.R2ANRHI where ADLB.PEAKFL = ‘Y’ and ADLB.PARAMCD = ‘ALT’ ALTBLMX Post-Baseline Maximum Ratio ALT/BL Num For each subject, ADLB.AVAL where ADLB.PEAKFL = ‘Y’ and ADLB.PARAMCD = ‘ALT’ / ADLB.AVAL where ADLB.DILIBL = ‘Y’ and ADLB.PARAMCD = ‘ALT’ ASTULNMX Post-Baseline Maximum Ratio AST/ULN Num For each subject, ADLB.R2ANRHI where ADLB.PEAKFL = ‘Y’ and ADLB.PARAMCD = ‘AST’ ASTBLMX Post-Baseline Maximum Ratio AST/BL Num For each subject, ADLB.AVAL where ADLB.PEAKFL = ‘Y’ and ADLB.PARAMCD = ‘AST’ / ADLB.AVAL where ADLB.DILIBL = ‘Y’ and ADLB.PARAMCD = ‘AST’ ALPULNMX Post-Baseline Maximum Ratio ALP/ULN Num For each subject, ADLB.R2ANRHI where ADLB.PEAKFL = ‘Y’ and ADLB.PARAMCD = ‘ALP’ ALPBLMX Post-Baseline Maximum Ratio ALP/BL Num For each subject, ADLB.AVAL where ADLB.PEAKFL = ‘Y’ and ADLB.PARAMCD = ‘ALP’ / ADLB.AVAL where ADLB.DILIBL = ‘Y’ and ADLB.PARAMCD = ‘ALP’ TBALTMX Post-Baseline Maximum Ratio TB/ULN following ALTULNMX Num For each subject, max value of ADLB.R2ANRHI where ADLB.PARAMCD = ‘TB’ within xx days after post- baseline maximum ALT value. TBASTMX Post-Baseline Maximum Ratio TB/ULN following ASTULNMX Num For each subject, max value of ADLB.R2ANRHI where ADLB.PARAMCD = ‘TB’ within xx days after post- baseline maximum AST value. TBALPMX Post-Baseline Maximum Ratio TB/ULN following ALPULNMX Num For each subject, max value of ADLB.R2ANRHI where ADLB.PARAMCD = ‘TB’ within xx days after post- baseline maximum ALP value. ALPALTMX Max ALP/ULN Ratio after Max ALT/ULN Ratio Num For each subject, max value of ADLB.R2ANRHI where ADLB.PARAMCD = ‘ALP’ within xx days after post- baseline maximum ALT value. ALPASTMX Max ALP/ULN Ratio after Max AST/ULN Ratio Num For each subject, max value of ADLB.R2ANRHI where ADLB.PARAMCD = ‘ALP’ within xx days after post- baseline maximum AST value. RVAL R Value Num ADLB.AVAL where ADLB.PARAMCD = ‘R’ DILI Workup Flags
Contains Nonbinding Recommendations 33 Variable Name Variable Label Type Comments ALCHFL Alcohol Assessment Flag Char Expected Values: ‘Y’, ‘N’, or null If Alcohol information was collected and reported in the SDTM.SU domain as a result of potential DILI injury, then ‘Y’. If alcohol information was not collected as a result of potential DILI injury, then ‘N’. If unknown, null HEPFL Hepatitis Serology Flag Char Expected Values: ‘Y’, ‘N’, or null If Hepatitis Serology information was collected and reported in the SDTM.MB domain as a result of potential DILI injury, then ‘Y’. If Hepatitis Serology information was not collected as a result of potential DILI injury, then ‘N’. If unknown, null AUTOIFL Auto-Immune Serology Flag Char Expected Values: ‘Y’, ‘N’, or null If Auto-Immune Serology information was collected and reported in the SDTM.LB domain as a result of potential DILI injury, then ‘Y’. If Auto-Immune Serology was not performed as a result of potential DILI injury, then ‘N’. If unknown, null ULTRAFL Ultrasound Flag Char Expected Values: ‘Y’, ‘N’, or null If an ultrasound was performed and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If an ultrasound was not performed as a result of potential DILI injury, then ‘N’. If unknown, null CTFL CT Scan Flag Char Expected Values: ‘Y’, ‘N’, or null If a CT scan was performed and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If a CT scan was not performed as a result of potential DILI injury, then ‘N’. If unknown, null MRIFL MRI Flag Char Expected Values: ‘Y’, ‘N’, or null If an MRI was performed and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If an MRI was not performed as a result of potential DILI injury, then ‘N’. If unknown, null BIOPFL Biopsy Flag Char Expected Values: ‘Y’, ‘N’, or null If a biopsy was conducted and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If a biopsy was not performed as a result of potential DILI injury, then ‘N’. If unknown, null ERCPFL ERCP Flag Char Expected Values: ‘Y’, ‘N’, or null If an ERCP was performed and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If an ERCP was not performed as a result of potential DILI injury, then ‘N’. If unknown, null MRCPFL MRCP Flag Char Expected Values: ‘Y’, ‘N’, or null If a MRCP was performed and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If a MRCP was not performed as a result of potential DILI injury, then ‘N’. If unknown, null LVTRNSFL Liver Transplant Flag Char Expected Values: ‘Y’, ‘N’, or null If a liver transplant was performed and reported in the SDTM.PR as a result of potential DILI injury, then ‘Y’. If a liver transplant was not performed as a result of potential DILI injury, then ‘N’. If unknown, null OTHPRFL Other Procedure Flag Char Expected Values: ‘Y’, ‘N’, or null
Contains Nonbinding Recommendations 34 Variable Name Variable Label Type Comments If another procedure was performed as the result of potential DILI injury, then ‘Y’. If no other procedure was performed as the result of potential DILI injury, then ‘N’. If unknown, null 767 5.2.3.3 Microscopic Findings Analysis Data Set (ADMI) 768 769 The ADMI data set contains histological data used to support accepted efficacy determination in 770 noncirrhotic NASH development programs. AVALC is the primary variable used to support the 771 analysis. This data set should be derived primarily from the Microscopic Findings (SDTM.MI) 772 data set and should contain additional parameters discussed with FDA during the pre-NDA 773 process to assess all histological endpoints. This data set follows the ADaM BDS. 774 775 The ADMI data set should include the basic demographic variables (e.g., assigned treatment, 776 treatment start and end dates, baseline biopsy characteristics) from the ADSL data set. 777 778 Table 14. ADMI Variables 779 780 Variable Name Variable Label Type Comments Biopsy Parameter Information PARAM Parameter Text The ADMI data set should contain all records from the SDTM.MI domain. In addition, the sponsor should create records with parameters to evaluate the histological endpoints, with results captured in the appropriate AVAL/AVALC variable. PARAMCD Parameter Code Text Short Code for PARAM. Sponsors may choose an appropriate parameter code for the derived parameters that evaluate the histological endpoints. MITSTDTL Microscopic Examination Detail Text MI.MITSTDTL PARCAT1 Parameter Category 1 Text MI.MICAT for records coming from MI data set. For derived parameters evaluating histological endpoints, create an appropriate category (i.e., ‘Primary histological endpoint’, ‘Secondary efficacy endpoint’, etc.) Analysis Information AVAL Analysis Value Num Transferred from either MI.MISTRESN or MI.MIORRES AVALC Analysis Value I Text Transferred from MI.MISTRESC for character tests (i.e., Definite NASH) AVALCAT1 Analysis Category 1 Text It may be appropriate to categorize results of certain tests. For example, the sponsor may decide it is important to separate Lobular Inflammation results of 0 and 1 from results greater than one. In that case, for records with PARAM = Lobular Inflammation, AVALCAT would take values of either ‘Lobular Inflammation score 0 to 1’ or ‘Lobular Inflammation greater than 1’. Additional
Contains Nonbinding Recommendations 35 Variable Name Variable Label Type Comments variables may be created (AVALCAT2, AVALCAT3, etc.) as necessary. Criteria Evaluation CRIT1 Analysis Criterion 1 Text NOTE: This is an example of a criterion that may be used for analysis. Specific criterion to include in this data set should be discussed with FDA, as this may change on a study-by-study basis. Should more than one criterion be required, used CRIT2/CRIT2FL, CRIT3/CRIT3FL, etc. Where PARAMCD is ‘HCYTBALL’, ‘LOBINF’, ‘MODISHAK’, ‘NASHCRN’, ‘NASHHBLN’, ‘NLOBI’, ‘SAFACT’, ‘STEATOS’ indicates criteria of interest as ‘Improvement of histological feature by at least 1 point/stage’ CRIT1FL Criterion 1 Evaluation Result Flag Text Set to ‘Y’ if CRIT1 satisfied; else set to ‘N’ Other Flags ABLFL Analysis Baseline Flag Text Set to ‘Y’ for last non-missing record for each value of PARAMCD prior to TRTSDT ANL01FL Analysis Record Flag 01 Text Set to ‘Y’ for the baseline record and the records closest to the target day within the visit target interval as defined by the study metadata. 781 5.2.3.4 Non-Invasive Serum Biomarkers of Liver Fibrosis and NASH 782 Analysis Data Set (ADRS) 783 784 The ADRS data set contains information to support additional secondary efficacy endpoints 785 based on non-invasive serum biomarkers of liver fibrosis and NASH (e.g., MELD, FIB-4, ELF, 786 APRI). The MELD score should be provided for noncirrhotic NASH trials. Sponsors should 787 consult with FDA regarding additional tests that may be required for submission. 788 789 AVAL is the primary variable used to support the analysis. This data set should be derived 790 primarily from the Clinical Classifications and Disease Response (SDTM.RS) data set, though 791 many of the tests are calculations based on measurements collected in the Laboratory 792 (SDTM.LB) domain. This data set also contains flags based on the results of derived parameters 793 in the ADMI data set. This data set follows the ADaM Basic Data Structure (BDS). 794 795 The ADRS data set should include the basic demographic variables (e.g., assigned treatment, 796 treatment start and end dates, baseline biopsy characteristic, non-invasive baseline 797 characteristics) from the ADSL data set. 798 799
Contains Nonbinding Recommendations 36 Table 15. ADRS Variables 800 801 Variable Name Variable Label Type Comments Parameter Information PARAM Parameter Text The ADRS data set should contain all records from the SDTM.RS and SDTM.LB domains for the following example tests: • MELD Score • FIB-4 Score • ELF Score • APRI Score In addition, the sponsor should create records with parameters to evaluate the study’s endpoints, with results captured in the appropriate AVAL/AVALC variable. An example parameter may be: ‘MELD Score from Baseline =<12 to >15’. In this case, sponsors should consider a subjects’ baseline MELD score and their maximum post-baseline record. If their baseline record was less than 12 and their maximum post-baseline record was greater than or equal to 15, AVALC would return a value of ‘Y’ for this parameter. This is purely an example parameter – sponsors should create their own parameters in consultation with the FDA review division and the endpoints of their study. PARAMCD Parameter Code Text Short Code for PARAM Analysis Information AVAL Analysis Value Num Transferred from either LB.LBSTRESN or RS.RSSTRESN. For derived parameters that evaluate a specific endpoint, ‘1’ if the endpoint criteria are met or ‘0’ if the endpoint criteria are not met. AVALC Analysis Value (C) Text Character value of AVAL. For derived parameters that evaluate a specific endpoint, AVALC is ‘Y’ if the endpoint criteria are met. Otherwise, null. Other Flags DTYPE Derivation Type Text If multiple readings are taken at a given visit, create a new record if appropriate that takes the average measurements of the other records for that parameter at that visit. DTYPE in this case would take a value of ‘AVERAGE’. ABLFL Analysis Baseline Flag Text Set to ‘Y’ for last non-missing record for each value of PARAMCD prior to TRTSDT ANL01FL Analysis Record Flag 01 Text Flag records used for analysis. Note: This may differ from study-to-study, but one example definition may be: ‘Flag baseline record and post-baseline records closest to the target day within the visit target interval listed in the study metadata.’
Contains Nonbinding Recommendations 37 Variable Name Variable Label Type Comments Criteria Evaluation CRIT1 Analysis Criterion 1 Text Use this flag to support any derived parameters for this data set. For the example parameter listed under PARAM, the corresponding CRIT1 may take a value of ‘MELD < 12’ where PARAM = ‘MELD01-Score’ CRIT1FL Criterion 1 Evaluation Result Flag Text Set to ‘Y’ if CRIT1 satisfied; else set to ‘N’ CRIT2 Analysis Criterion 2 Text Use this flag to support any derived parameters for this data set. For the example parameter listed under PARAM, the corresponding CRIT2 may take a value of ‘MELD > 15’ where PARAM = ‘MELD01-Score’ CRIT2FL Criterion 2 Evaluation Result Flag Text Set to ‘Y’ if CRIT2 satisfied; else set to ‘N’ 802 5.2.4 Time-to-Event Analysis Data Set (ADTTE) 803 804 The ADTTE data set contains all records needed to support time-to-event analysis for 805 noncirrhotic NASH endpoints and DILI. AVAL is the primary variable used to support the 806 analysis. Sponsors should follow the ADaM Basic Data Structure for Time-to-Event Analyses 807 when creating this data set. The description of the analysis parameter (PARAM) contains the unit 808 of measurement where results are captured in AVAL. 809 810 The time-to-event data set should include records for all subjects, including subjects who did not 811 experience an event defined by PARAM. For a subject who did not experience a specific type of 812 event, the subject’s time to event is considered ‘right-censored,’ where the value of AVAL 813 represents the length of time between the starting point and the end of the observation period 814 (e.g., the duration of the study for that subject). The numeric Censor (CNSR) variable is used to 815 distinguish whether a subject experienced an event between the defined starting point and the 816 end of the observation period. 817 818 When supporting analyses as listed in the examples below, ADTTE may be sourced from 819 ADAE, ADMI, ADDILI and ADSL (or elsewhere). Sponsors should consult FDA to determine 820 the appropriate parameters and their corresponding derivations to be collected and submitted in 821 this data set. 822 823 Sponsors should provide clear explanations in the ADaM define.xml for how AVAL is derived 824 for each parameter. In some cases, such as Time to Death, it may look at ASTDY for one record. 825 For other parameters where multiple records should be evaluated to determine if the subject has 826 met the endpoint, the derivation for AVAL may be more complicated. For example, a Time to 827 Peak Lab Washout for DILI parameter needs to consider both when the subject’s labs ‘peak’ as 828 well as when those peaks reach a ‘washout’ state—in this case, sponsors could use values of 829 ADY when ADLB.PEAKFL and ADLB.REDUCEFL = ‘Y’ to calculate AVAL in ADTTE. 830 831
Contains Nonbinding Recommendations 38 Examples of applicable analyses to support safety and efficacy analyses may include: 832 833 Table 16. Example Time to Event Parameters 834 835 PARAMCD PARAM26,27 AVAL HPCIRRH Time to Histological Progression to Cirrhosis (days) Propose derivations for each parameter HEPDCE Time to Hepatic Decompensation Event (days) ASCREQTR Time to Ascites requiring treatment (days) HEPENC Time to Hepatic Encephalopathy at least West Haven grade 2 or above requiring hospitalization (days) VARHEM Time to Variceal hemorrhage requiring hospitalization (days) OTHCDE Time to Other Clinical Decompensation Event (e.g., Spontaneous Bacterial Peritonitis) (days) LVRTRNS Time to Liver Transplant (days) DEATH Time to Death (days) ONSETDIL Time to Onset Potential DILI Injury (days) WASHOUT Time to Peak Lab Washout for DILI (days) 836 26 Per the ADaM Basic Data Structure for Time-to-Event Analyses, PARAM in the ADTTE may be longer than 40 characters (maximum 200). See https://www.cdisc.org/standards/foundational/adam/adam-basic-data-structure-bds- time-event-tte-analyses-v1-0. 27 The examples listed below are measured in days. Sponsors should use their judgement in determining the appropriate unit of measurement.
Contains Nonbinding Recommendations 39 APPENDIX 837 838 Example ADLB and ADDILI Data Sets 839 840 Consider the sample Laboratory Analysis Data Set (ADLB) and Drug-Induced Liver Injury Analysis Data Set (ADDILI) tables below 841 for Subject ABC-123. This example only shows one subject’s alanine aminotransferase (ALT) values; however, for the purposes of 842 this example, assume the subject’s aspartate aminotransferase (AST) and/or total bilirubin (TB) values indicate the subject is a 843 potential drug-induced liver injury (DILI) candidate as identified by pre-established criteria between the sponsor and the U.S. Food 844 and Drug Administration (FDA) (example criteria noted in the ADDILI section of this document). As a reminder, these criteria are 845 sample criteria. Sponsors should consult with FDA to establish appropriate criteria to evaluate DILI. Below is a list of other 846 considerations for this sample data set: 847 848 • In this example, the subject has two pre-baseline lab readings. These lab reading are averaged to create a new baseline record 849 for each parameter. 850 851 • Onset DILI (ONSETFL = ‘Y’) is defined in this example as the first visit in which a subjects’ ALT > 3x ULN. This happens 852 on study day 14 (assume ANRHI = 55.0). Sponsors may use their own definition for Onset DILI after consultation with FDA 853 review division. 854 855 • Reduced Flag (REDUCEFL = ‘Y’) may only occur after a subject has reached their peak (PEAKFL = ‘Y’) for a given subject 856 and parameter. 857 858 • The example ADDILI data set only contains the variables pertinent to ALT; sponsors should follow the guidance provided in 859 the ADDILI section of this document for the full list of variables to be provided. 860 861 • For the example ADDILI data set, ALTULNMX is calculated as the maximum post-baseline ALT value divided by the upper 862 limit of normal (197.0 / 55.0 = 3.58). ALTBLMX is calculated as the maximum post-baseline ALT value divided by the DILI 863 baseline value (197.0 / 52.5 = 3.75). 864 865
Contains Nonbinding Recommendations 40 Table A. Subset of Sample ADLB* 866 867 PARAMCD AVAL BASE ADY ABLFL ANL02FL ANL03FL PEAKFL REDUCEFL ONSETFL LASTFL ALT 51.0 52.5 -14 N N N N N N N ALT 54.0 52.5 -7 N N N N N N N ALT 52.5 1 Y N N N N N N ALT 95.0 52.5 7 N N N N N N N ALT 197.0 52.5 14 N Y N Y N Y N ALT 191.0 52.5 21 N N N N N N N ALT 92.0 52.5 28 N N N N Y N N ALT 73.0 52.5 35 N N Y N N N Y * It is acknowledged that ‘N’ may not be indicated for flag variables. 868 869 Table B. Subset of Sample ADDILI 870 871 PARAM AVALC ALTULNMX ALTBLMX Potential DILI Y 3.58 3.75 Outcome of Potential DILI RECOVERED/RESOLVED 3.58 3.75 Action Taken from Potential DILI DOSE REDUCED 3.58 3.75 872 Example MI and SUPPMI Domains 873 874 Consider the sample Microscopic Findings (MI) and Supplemental Microscopic Findings (SUPPMI) domains below for Subject ABC- 875 123. This subject has two biopsies, one at baseline and one at end of treatment, each with two pathologists reviewing. Any disagreement 876 between the histopathological assessment between the pathologists’ results in an adjudication committee making a final determination 877
Contains Nonbinding Recommendations 41 (as shown with Microscopic Findings Test (MITEST) = ‘FIBROSIS’ during the first biopsy). The data set should also include standard 878 variables such as STUDYID, DOMAIN, MIDTC, and MIDY as noted in the SDTM Implementation Guide. The sample below contains 879 only a few measurements; sponsors should refer to the MI section of this document for the complete list of recommended and permissible 880 parameters to be collected from the biopsy. 881 882 This example domain uses MIREFID as the identifier for the slide being analyzed, but sponsors should use identifier variables 883 available from the SDTMIG to label biopsies and slides cut from the biopsy. The linkage between the identifier variables should be 884 made clear in the define.xml and/or Study Data Reviewers Guide (SDRG) files. Linkages between individual biopsies and/or slides 885 and other domains such as Biospecimen Findings (BS) or Biospecimen Events (BE) should be connected via a Related Records 886 (RELREC) domain. 887 888 The SUPPMI domain shows the adequacy of the slides. The slide evaluated during the baseline biopsy was deemed adequate, and the 889 end of treatment biopsy was deemed not adequate due to both a blurred image and a cracked slide. As such, the MIACPTFL variable 890 is null for the end of treatment biopsy as these records were not accepted for the analysis due to the inadequate slide. 891 892 Table C. Subset of Sample MI Domain 893 894 MIREFID MITEST MITSTDTL MIORRES MIACPTFL MIEVAL MIEVALID VISIT SPEC001 NAFLD Activity Score TOTAL SCORE 5 PATHOLOGIST PATHOLOGIST 1 BASELINE SPEC001 Fibrosis NASH CRN FIBROSIS STAGE 1B PATHOLOGIST PATHOLOGIST 1 BASELINE SPEC001 NAFLD Activity Score TOTAL SCORE 5 PATHOLOGIST PATHOLOGIST 2 BASELINE SPEC001 Fibrosis NASH CRN FIBROSIS STAGE 3 PATHOLOGIST PATHOLOGIST 2 BASELINE SPEC001 NAFLD Activity Score TOTAL SCORE 5 Y ADJUDICATION COMMITTEE ADJUDICATOR BASELINE SPEC001 Fibrosis NASH CRN FIBROSIS STAGE 3 Y ADJUDICATION COMMITTEE ADJUDICATOR BASELINE
Contains Nonbinding Recommendations 42 MIREFID MITEST MITSTDTL MIORRES MIACPTFL MIEVAL MIEVALID VISIT SPEC002 NAFLD Activity Score TOTAL SCORE 5 PATHOLOGIST PATHOLOGIST 1 END OF TREATMENT SPEC002 Fibrosis NASH CRN FIBROSIS STAGE 3 PATHOLOGIST PATHOLOGIST 1 END OF TREATMENT SPEC002 NAFLD Activity Score TOTAL SCORE 5 PATHOLOGIST PATHOLOGIST 2 END OF TREATMENT SPEC002 Fibrosis NASH CRN FIBROSIS STAGE 3 PATHOLOGIST PATHOLOGIST 2 END OF TREATMENT 895 Table D. Subset of Sample SUPPMI Domain 896 897 IDVAR IDVARVAL QLABEL QVAL MIREFID SPEC001 Overall Image Quality Adequate MIREFID SPEC002 Overall Image Quality Not Adequate MIREFID SPEC002 Image Condition MULTIPLE MIREFID SPEC002 Image Condition 1 CRACKED SLIDE MIREFID SPEC002 Image Condition 2 BLURRY IMAGE 898
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